Publications by authors named "Magda Bienko"

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Translocations can drive expression changes of multiple genes in regulons covering entire chromosome arms.
Anna Oncins, Roser Zaurin, Houyem Toukabri, Kimberly Quililan, José R Hernández Mora, Magda Bienko

Nucleic Acids Res· August 2025

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The power of two: Combining imaging and sequencing as readouts for in vivo pooled genetic screens.
Carlos Jiménez, Nicola Crosetto, Magda Bienko

Mol Cell· August 2025

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FAIR sharing of Chromatin Tracing datasets using the newly developed 4DN FISH Omics Format.
Rahi Navelkar, Andrea Cosolo, Bogdan Bintu, Yubao Cheng, Vincent Gardeux, Magda Bienko

ArXiv· August 2025

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Emerging methods and applications in 3D genomics.
Simona Pedrotti, Ilaria Castiglioni, Cynthia Perez-Estrada, Linxuan Zhao, Jinxin Phaedo Chen, Magda Bienko

Curr Opin Cell Biol· October 2024

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What tool or method do you wish existed?
Yvonne Y Chen, Charles L Evavold, Matthias Mann, Emily R Davenport, Margaret McFall-Ngai, Magda Bienko

Cell· August 2024

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Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images.
Erik Wernersson, Eleni Gelali, Gabriele Girelli, Su Wang, David Castillo, Magda Bienko

Nat Methods· July 2024

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Author Correction: scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells.
Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Magda Bienko

Nat Commun· April 2024

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High clonal diversity and spatial genetic admixture in early prostate cancer and surrounding normal tissue.
Ning Zhang, Luuk Harbers, Michele Simonetti, Constantin Diekmann, Quentin Verron, Magda Bienko

Nat Commun· April 2024

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scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells.
Jinxin Phaedo Chen, Constantin Diekmann, Honggui Wu, Chong Chen, Giulia Della Chiara, Magda Bienko

Nat Commun· February 2024

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Compartmentalizing damaged DNA: A double-edged sword.
Emily Georgiades, Nicola Crosetto, Magda Bienko

Mol Cell· January 2024

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Enhancers dysfunction in the 3D genome of cancer cells.
Giulia Della Chiara, Carlos Jiménez, Mohit Virdi, Nicola Crosetto, Magda Bienko

Front Cell Dev Biol· November 2023

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Deficiency of the Heterogeneous Nuclear Ribonucleoprotein U locus leads to delayed hindbrain neurogenesis.
Francesca Mastropasqua, Marika Oksanen, Cristina Soldini, Shemim Alatar, Abishek Arora, Magda Bienko

Biol Open· October 2023

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Separation of transcriptional repressor and activator functions in Drosophila HDAC3.
Min Tang, Isabel Regadas, Sergey Belikov, Olga Shilkova, Lei Xu, Magda Bienko

Development· August 2023

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How Hi-C ignited the era of 3D genome biology.
Magda Bienko

Nat Rev Genet· July 2023

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A GC-centered view of 3D genome organization.
Britta Am Bouwman, Nicola Crosetto, Magda Bienko

Curr Opin Genet Dev· February 2023

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Genomic Profiling Identifies Putative Pathogenic Alterations in NSCLC Brain Metastases.
Marcin Nicoś, Luuk Harbers, Enrico Patrucco, Maximilian Kramer-Drauberg, Xiaolu Zhang, Magda Bienko

JTO Clin Res Rep· December 2022

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FRET-FISH probes chromatin compaction at individual genomic loci in single cells.
Ana Mota, Szymon Berezicki, Erik Wernersson, Luuk Harbers, Xiaoze Li-Wang, Magda Bienko

Nat Commun· November 2022

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The era of 3D and spatial genomics.
Britta A M Bouwman, Nicola Crosetto, Magda Bienko

Trends Genet· October 2022

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An atlas of endogenous DNA double-strand breaks arising during human neural cell fate determination.
Roberto Ballarino, Britta A M Bouwman, Federico Agostini, Luuk Harbers, Constantin Diekmann, Magda Bienko

Sci Data· July 2022

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Dangerous RNA links pave the way to glioblastoma.
Magda Bienko

Mol Cell· May 2022

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RNA gradients: Shapers of 3D genome architecture.
Britta A M Bouwman, Nicola Crosetto, Magda Bienko

Curr Opin Cell Biol· February 2022

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Simultaneous visualization of DNA loci in single cells by combinatorial multi-color iFISH.
Ana Mota, Maud Schweitzer, Erik Wernersson, Nicola Crosetto, Magda Bienko

Sci Data· February 2022

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piRNAs initiate transcriptional silencing of spermatogenic genes during C. elegans germline development.
Eric Cornes, Loan Bourdon, Meetali Singh, Florian Mueller, Piergiuseppe Quarato, Magda Bienko

Dev Cell· January 2022

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Somatic Copy Number Alterations in Human Cancers: An Analysis of Publicly Available Data From The Cancer Genome Atlas.
Luuk Harbers, Federico Agostini, Marcin Nicos, Dimitri Poddighe, Magda Bienko

Front Oncol· July 2021

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COVseq is a cost-effective workflow for mass-scale SARS-CoV-2 genomic surveillance.
Michele Simonetti, Ning Zhang, Luuk Harbers, Maria Grazia Milia, Silvia Brossa, Magda Bienko

Nat Commun· June 2021

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