Publications by authors named "Magnus Fontes"

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The AML cellular state space unveils NPM1 immune evasion subtypes with distinct clinical outcomes.
Henrik Lilljebjörn, Pablo Peña-Martínez, Hanna Thorsson, Rasmus Henningsson, Marianne Rissler, Magnus Fontes

Nat Commun· November 2025

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Immune checkpoint inhibitors increase T cell immunity during SARS-CoV-2 infection.
Nader Yatim, Jeremy Boussier, Pauline Tetu, Nikaïa Smith, Timothée Bruel, Magnus Fontes

Sci Adv· August 2021

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Polygenic risk for skin autoimmunity impacts immune checkpoint blockade in bladder cancer.
Zia Khan, Flavia Di Nucci, Antonia Kwan, Christian Hammer, Sanjeev Mariathasan, Magnus Fontes

Proc Natl Acad Sci U S A· June 2020

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Machine learning can identify newly diagnosed patients with CLL at high risk of infection.
Rudi Agius, Christian Brieghel, Michael A Andersen, Alexander T Pearson, Bruno Ledergerber, Magnus Fontes

Nat Commun· January 2020

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Sex differences in IL-17 contribute to chronicity in male versus female urinary tract infection.
Anna Zychlinsky Scharff, Matthieu Rousseau, Livia Lacerda Mariano, Tracy Canton, Camila Rosat Consiglio, Magnus Fontes

JCI Insight· May 2019

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Magnus Fontes

Ugeskr Laeger· April 2019

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SMSSVD: SubMatrix Selection Singular Value Decomposition.
Rasmus Henningsson, Magnus Fontes

Bioinformatics· February 2019

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Human thymopoiesis is influenced by a common genetic variant within the locus.
Emmanuel Clave, Itauá Leston Araujo, Cécile Alanio, Etienne Patin, Jacob Bergstedt, Magnus Fontes

Sci Transl Med· September 2018

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Publisher Correction: Natural variation in the parameters of innate immune cells is preferentially driven by genetic factors.
Etienne Patin, Milena Hasan, Jacob Bergstedt, Vincent Rouilly, Valentina Libri, Magnus Fontes

Nat Immunol· June 2018

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Natural variation in the parameters of innate immune cells is preferentially driven by genetic factors.
Etienne Patin, Milena Hasan, Jacob Bergstedt, Vincent Rouilly, Valentina Libri, Magnus Fontes

Nat Immunol· March 2018

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What is a "unimodal" cell population? Using statistical tests as criteria for unimodality in automated gating and quality control.
Kerstin Johnsson, Magnus Linderoth, Magnus Fontes

Cytometry A· September 2017

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Deconvolution of the Response to Bacillus Calmette-Guérin Reveals NF-κB-Induced Cytokines As Autocrine Mediators of Innate Immunity.
Aurélie Bisiaux, Jeremy Boussier, Darragh Duffy, Lluis Quintana-Murci, Magnus Fontes

Front Immunol· July 2017

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Attenuation of RNA viruses by redirecting their evolution in sequence space.
Gonzalo Moratorio, Rasmus Henningsson, Cyril Barbezange, Lucia Carrau, Antonio V Bordería, Magnus Fontes

Nat Microbiol· June 2017

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Standardized Whole-Blood Transcriptional Profiling Enables the Deconvolution of Complex Induced Immune Responses.
Alejandra Urrutia, Darragh Duffy, Vincent Rouilly, Céline Posseme, Raouf Djebali, Magnus Fontes

Cell Rep· September 2016

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Identification of ETV6-RUNX1-like and DUX4-rearranged subtypes in paediatric B-cell precursor acute lymphoblastic leukaemia.
Henrik Lilljebjörn, Rasmus Henningsson, Axel Hyrenius-Wittsten, Linda Olsson, Christina Orsmark-Pietras, Magnus Fontes

Nat Commun· June 2016

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Increasing Clinical Severity during a Dengue Virus Type 3 Cuban Epidemic: Deep Sequencing of Evolving Viral Populations.
Rosmari Rodriguez-Roche, Hervé Blanc, Antonio V Bordería, Gisell Díaz, Rasmus Henningsson, Magnus Fontes

J Virol· May 2016

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Erratum to: BayesFlow: latent modeling of flow cytometry cell populations.
Kerstin Johnsson, Jonas Wallin, Magnus Fontes

BMC Bioinformatics· March 2016

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BayesFlow: latent modeling of flow cytometry cell populations.
Kerstin Johnsson, Jonas Wallin, Magnus Fontes

BMC Bioinformatics· January 2016

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Whole-Genome Sequencing Analysis from the Chikungunya Virus Caribbean Outbreak Reveals Novel Evolutionary Genomic Elements.
Kenneth A Stapleford, Gonzalo Moratorio, Rasmus Henningsson, Rubing Chen, Séverine Matheus, Magnus Fontes

PLoS Negl Trop Dis· January 2016

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Group Selection and Contribution of Minority Variants during Virus Adaptation Determines Virus Fitness and Phenotype.
Antonio V Bordería, Ofer Isakov, Gonzalo Moratorio, Rasmus Henningsson, Sonia Agüera-González, Magnus Fontes

PLoS Pathog· May 2015

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Low Bias Local Intrinsic Dimension Estimation from Expected Simplex Skewness.
Kerstin Johnsson, Charlotte Soneson, Magnus Fontes

IEEE Trans Pattern Anal Mach Intell· January 2015

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The ABCs of viral hepatitis that define biomarker signatures of acute viral hepatitis.
Darragh Duffy, Rasha Mamdouh, Melissa Laird, Charlotte Soneson, Lenaig Le Fouler, Magnus Fontes

Hepatology· April 2014

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A framework for list representation, enabling list stabilization through incorporation of gene exchangeabilities.
Charlotte Soneson, Magnus Fontes

Biostatistics· January 2012

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The projection score--an evaluation criterion for variable subset selection in PCA visualization.
Magnus Fontes, Charlotte Soneson

BMC Bioinformatics· July 2011

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Early changes in the hypothalamic region in prodromal Huntington disease revealed by MRI analysis.
Charlotte Soneson, Magnus Fontes, Yongxia Zhou, Vladimir Denisov, Jane S Paulsen

Neurobiol Dis· December 2010

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