Publications by authors named "Mainul Hoque"

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NFAT5 governs cellular plasticity-driven resistance to KRAS-targeted therapy in pancreatic cancer.
Daiyong Deng, Habeebunnisa Begum, Tong Liu, Jiangyan Zhang, Qiang Zhang, Mainul Hoque

J Exp Med· November 2024

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Extraction, Purification, and Next-Generation Sequencing (NGS) Analysis of DNA and RNA from Formalin-Fixed and Paraffin-Embedded (FFPE) Tissue.
Mainul Hoque, Veera D'Mello, Seema Husain, Patricia Soteropoulos

Methods Mol Biol· November 2024

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Systematic Characterization of p53-Regulated Long Noncoding RNAs across Human Cancers Reveals Remarkable Heterogeneity among Different Tumor Types.
Kausik Regunath, Vitalay Fomin, Zhaoqi Liu, Pingzhang Wang, Mainul Hoque

Mol Cancer Res· June 2024

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Time-Course Progression of Whole Transcriptome Expression Changes of Trigeminal Ganglia Compared to Dorsal Root Ganglia in Rats Exposed to Nerve Injury.
Olga A Korczeniewska, Seema Husain, Mainul Hoque, Patricia Soteropoulos, Junad Khan

J Pain· January 2024

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Combined model of topside ionosphere and plasmasphere derived from radio-occultation and Van Allen Probes data.
Fabricio S Prol, Artem G Smirnov, M Mainul Hoque, Yuri Y Shprits

Sci Rep· June 2022

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SETX (senataxin), the helicase mutated in AOA2 and ALS4, functions in autophagy regulation.
Patricia Richard, Shuang Feng, Yueh-Lin Tsai, Wencheng Li, Paola Rinchetti, Mainul Hoque

Autophagy· August 2021

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Rapidly Correcting Frameshift Mutations in the Mycobacterium tuberculosis Gene Produce Reversible Ethambutol Resistance and Small-Colony-Variant Morphology.
Hassan Safi, Subramanya Lingaraju, Shuyi Ma, Seema Husain, Mainul Hoque

Antimicrob Agents Chemother· August 2020

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Widespread transcript shortening through alternative polyadenylation in secretory cell differentiation.
Larry C Cheng, Dinghai Zheng, Erdene Baljinnyam, Fangzheng Sun, Koichi Ogami, Mainul Hoque

Nat Commun· June 2020

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Phase variation in produces transiently heritable drug tolerance.
Hassan Safi, Pooja Gopal, Subramanya Lingaraju, Shuyi Ma, Carly Levine, Mainul Hoque

Proc Natl Acad Sci U S A· September 2019

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Transcriptome 3'end organization by PCF11 links alternative polyadenylation to formation and neuronal differentiation of neuroblastoma.
Anton Ogorodnikov, Michal Levin, Surendra Tattikota, Sergey Tokalov, Mainul Hoque

Nat Commun· December 2018

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The Gene, Implicated in Amyotrophic Lateral Sclerosis and Frontotemporal Dementia, Encodes a Protein That Functions in Control of Endothelin and Glutamate Signaling.
Vitalay Fomin, Patricia Richard, Mainul Hoque, Cynthia Li, Zhuoying Gu

Mol Cell Biol· November 2018

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Identifying Cellular Nonsense-Mediated mRNA Decay (NMD) Targets: Immunoprecipitation of Phosphorylated UPF1 Followed by RNA Sequencing (p-UPF1 RIP-Seq).
Tatsuaki Kurosaki, Mainul Hoque, Lynne E Maquat

Methods Mol Biol· July 2018

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Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in .
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S Oliveira, Mainul Hoque

RNA· December 2017

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MPK1/SLT2 Links Multiple Stress Responses with Gene Expression in Budding Yeast by Phosphorylating Tyr1 of the RNAP II CTD.
Nathan Yurko, Xiaochuan Liu, Takashi Yamazaki, Mainul Hoque, Bin Tian

Mol Cell· December 2017

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Comparative analysis of alternative polyadenylation in and .
Xiaochuan Liu, Mainul Hoque, Marc Larochelle, Jean-François Lemay, Nathan Yurko

Genome Res· October 2017

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Distinct regulation of alternative polyadenylation and gene expression by nuclear poly(A) polymerases.
Weimin Li, Wencheng Li, Rakesh S Laishram, Mainul Hoque, Zhe Ji

Nucleic Acids Res· September 2017

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Regulation of gene expression by translation factor eIF5A: Hypusine-modified eIF5A enhances nonsense-mediated mRNA decay in human cells.
Mainul Hoque, Ji Yeon Park, Yun-Juan Chang, Augusto D Luchessi, Tavane D Cambiaghi

Translation (Austin)· August 2017

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An Mtr4/ZFC3H1 complex facilitates turnover of unstable nuclear RNAs to prevent their cytoplasmic transport and global translational repression.
Koichi Ogami, Patricia Richard, Yaqiong Chen, Mainul Hoque, Wencheng Li

Genes Dev· June 2017

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Normalization of TAM post-receptor signaling reveals a cell invasive signature for Axl tyrosine kinase.
Stanley G Kimani, Sushil Kumar, Viralkumar Davra, Yun-Juan Chang, Canan Kasikara, Mainul Hoque

Cell Commun Signal· September 2016

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The Nrd1-like protein Seb1 coordinates cotranscriptional 3' end processing and polyadenylation site selection.
Jean-François Lemay, Samuel Marguerat, Marc Larochelle, Xiaochuan Liu, Rob van Nues, Mainul Hoque

Genes Dev· July 2016

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Intronic cleavage and polyadenylation regulates gene expression during DNA damage response through U1 snRNA.
Emral Devany, Ji Yeon Park, Michael R Murphy, George Zakusilo, Jorge Baquero, Mainul Hoque

Cell Discov· July 2016

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Correction: PAF Complex Plays Novel Subunit-Specific Roles in Alternative Cleavage and Polyadenylation.
Yan Yang, Wencheng Li, Mainul Hoque, Liming Hou, Steven Shen

PLoS Genet· February 2016

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Subcellular RNA profiling links splicing and nuclear DICER1 to alternative cleavage and polyadenylation.
Jonathan Neve, Kaspar Burger, Wencheng Li, Mainul Hoque, Radhika Patel

Genome Res· January 2016

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PAF Complex Plays Novel Subunit-Specific Roles in Alternative Cleavage and Polyadenylation.
Yan Yang, Wencheng Li, Mainul Hoque, Liming Hou, Steven Shen

PLoS Genet· January 2016

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Alternative cleavage and polyadenylation in spermatogenesis connects chromatin regulation with post-transcriptional control.
Wencheng Li, Ji Yeon Park, Dinghai Zheng, Mainul Hoque, Ghassan Yehia

BMC Biol· January 2016

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