Publications by authors named "Manabu Torii"

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A Preliminary Study of Clinical Concept Detection Using Syntactic Relations.
Manabu Torii, Elly W Yang, Son Doan

AMIA Annu Symp Proc· November 2019

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Extracting health-related causality from twitter messages using natural language processing.
Son Doan, Elly W Yang, Sameer S Tilak, Peter W Li, Daniel S Zisook, Manabu Torii

BMC Med Inform Decis Mak· April 2019

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Mining Health-Related Issues in Consumer Product Reviews by Using Scalable Text Analytics.
Manabu Torii, Sameer S Tilak, Son Doan, Daniel S Zisook, Jung-Wei Fan

Biomed Inform Insights· July 2016

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RLIMS-P 2.0: A Generalizable Rule-Based Information Extraction System for Literature Mining of Protein Phosphorylation Information.
Manabu Torii, Cecilia N Arighi, Gang Li, Qinghua Wang, Cathy H Wu

IEEE/ACM Trans Comput Biol Bioinform· June 2016

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Risk factor detection for heart disease by applying text analytics in electronic medical records.
Manabu Torii, Jung-Wei Fan, Wei-Li Yang, Theodore Lee, Matthew T Wiley

J Biomed Inform· December 2015

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RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.
Manabu Torii, Gang Li, Zhiwen Li, Rose Oughtred, Francesca Diella

Database (Oxford)· February 2015

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A framework for biomedical figure segmentation towards image-based document retrieval.
Luis D Lopez, Jingyi Yu, Cecilia Arighi, Catalina O Tudor, Manabu Torii

BMC Syst Biol· November 2014

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iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system.
Yifan Peng, Catalina O Tudor, Manabu Torii, Cathy H Wu, K Vijay-Shanker

Database (Oxford)· August 2014

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A generalizable NLP framework for fast development of pattern-based biomedical relation extraction systems.
Yifan Peng, Manabu Torii, Cathy H Wu, K Vijay-Shanker

BMC Bioinformatics· August 2014

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BioC: a minimalist approach to interoperability for biomedical text processing.
Donald C Comeau, Rezarta Islamaj Doğan, Paolo Ciccarese, Kevin Bretonnel Cohen, Martin Krallinger, Manabu Torii

Database (Oxford)· March 2014

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Detecting concept mentions in biomedical text using hidden Markov model: multiple concept types at once or one at a time?
Manabu Torii, Kavishwar Wagholikar, Hongfang Liu

J Biomed Semantics· January 2014

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Continuously rethinking the definition of influenza for surveillance systems: a Dependent Bayesian Expert System.
Farrokh Alemi, Martin J Atherton, David C Pattie, Manabu Torii

Med Decis Making· August 2013

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Coreference analysis in clinical notes: a multi-pass sieve with alternate anaphora resolution modules.
Siddhartha Reddy Jonnalagadda, Dingcheng Li, Sunghwan Sohn, Stephen Tze-Inn Wu, Kavishwar Wagholikar, Manabu Torii

J Am Med Inform Assoc· January 2013

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Pooling annotated corpora for clinical concept extraction.
Kavishwar B Wagholikar, Manabu Torii, Siddhartha R Jonnalagadda, Hongfang Liu

J Biomed Semantics· January 2013

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Bayesian processing of context-dependent text: reasons for appointments can improve detection of influenza.
Farrokh Alemi, Manabu Torii, Martin J Atherton, David C Pattie, Kenneth L Cox

Med Decis Making· September 2012

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Feasibility of pooling annotated corpora for clinical concept extraction.
Kavishwar Wagholikar, Manabu Torii, Siddhartha Jonnalagadda, Hongfang Liu

AMIA Jt Summits Transl Sci Proc· August 2012

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Feasibility of real-time satisfaction surveys through automated analysis of patients' unstructured comments and sentiments.
Farrokh Alemi, Manabu Torii, Laura Clementz, David C Aron

Qual Manag Health Care· May 2012

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Using machine learning for concept extraction on clinical documents from multiple data sources.
Manabu Torii, Kavishwar Wagholikar, Hongfang Liu

J Am Med Inform Assoc· January 2012

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The gene normalization task in BioCreative III.
Zhiyong Lu, Hung-Yu Kao, Chih-Hsuan Wei, Minlie Huang, Jingchen Liu, Manabu Torii

BMC Bioinformatics· October 2011

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dbOGAP - an integrated bioinformatics resource for protein O-GlcNAcylation.
Jinlian Wang, Manabu Torii, Hongfang Liu, Gerald W Hart, Zhang-Zhi Hu

BMC Bioinformatics· April 2011

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An exploratory study of a text classification framework for Internet-based surveillance of emerging epidemics.
Manabu Torii, Lanlan Yin, Thang Nguyen, Chand T Mazumdar, Hongfang Liu

Int J Med Inform· January 2011

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Document classification for mining host pathogen protein-protein interactions.
Lanlan Yin, Guixian Xu, Manabu Torii, Zhendong Niu, Jose M Maisog

Artif Intell Med· July 2010

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Support vector machine-based mucin-type o-linked glycosylation site prediction using enhanced sequence feature encoding.
Manabu Torii, Hongfang Liu, Zhang-Zhi Hu

AMIA Annu Symp Proc· November 2009

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BioTagger-GM: a gene/protein name recognition system.
Manabu Torii, Zhangzhi Hu, Cathy H Wu, Hongfang Liu

J Am Med Inform Assoc· April 2009

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