Publications by authors named "Mandy L Wilson"

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Epihiper-A high performance computational modeling framework to support epidemic science.
Jiangzhuo Chen, Stefan Hoops, Henning S Mortveit, Bryan L Lewis, Dustin Machi, Mandy L Wilson

PNAS Nexus· January 2025

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Novel multi-cluster workflow system to support real-time HPC-enabled epidemic science: Investigating the impact of vaccine acceptance on COVID-19 spread.
Parantapa Bhattacharya, Dustin Machi, Jiangzhuo Chen, Stefan Hoops, Bryan Lewis, Mandy L Wilson

J Parallel Distrib Comput· September 2024

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Data-driven mechanistic framework with stratified immunity and effective transmissibility for COVID-19 scenario projections.
Przemyslaw Porebski, Srinivasan Venkatramanan, Aniruddha Adiga, Brian Klahn, Benjamin Hurt, Mandy L Wilson

Epidemics· June 2024

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Multimodeling approach to evaluating the efficacy of layering pharmaceutical and nonpharmaceutical interventions for influenza pandemics.
Pragati V Prasad, Molly K Steele, Carrie Reed, Lauren Ancel Meyers, Zhanwei Du, Mandy L Wilson

Proc Natl Acad Sci U S A· July 2023

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Data-driven scalable pipeline using national agent-based models for real-time pandemic response and decision support.
Parantapa Bhattacharya, Jiangzhuo Chen, Stefan Hoops, Dustin Machi, Bryan Lewis, Mandy L Wilson

Int J High Perform Comput Appl· January 2023

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From 5Vs to 6Cs: Operationalizing Epidemic Data Management with COVID-19 Surveillance.
Akhil Sai Peddireddy, Dawen Xie, Pramod Patil, Mandy L Wilson, Dustin Machi

medRxiv· October 2020

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Evaluating the impact of international airline suspensions on the early global spread of COVID-19.
Aniruddha Adiga, Srinivasan Venkatramanan, James Schlitt, Akhil Peddireddy, Allan Dickerman, Mandy L Wilson

medRxiv· February 2020

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EpiViewer: an epidemiological application for exploring time series data.
Swapna Thorve, Mandy L Wilson, Bryan L Lewis, Samarth Swarup, Anil Kumar S Vullikanti

BMC Bioinformatics· November 2018

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GenoCAD Plant Grammar to Design Plant Expression Vectors for Promoter Analysis.
Anna Coll, Mandy L Wilson, Kristina Gruden, Jean Peccoud

Methods Mol Biol· January 2018

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Disparities in spread and control of influenza in slums of Delhi: findings from an agent-based modelling study.
Abhijin Adiga, Shuyu Chu, Stephen Eubank, Christopher J Kuhlman, Bryan Lewis, Mandy L Wilson

BMJ Open· January 2018

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Combining Participatory Influenza Surveillance with Modeling and Forecasting: Three Alternative Approaches.
John S Brownstein, Shuyu Chu, Achla Marathe, Madhav V Marathe, Andre T Nguyen, Mandy L Wilson

JMIR Public Health Surveill· November 2017

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Rule-Based Design of Plant Expression Vectors Using GenoCAD.
Anna Coll, Mandy L Wilson, Kristina Gruden, Jean Peccoud

PLoS One· April 2016

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Correction: Rule-Based Design of Plant Expression Vectors Using GenoCAD.
Anna Coll, Mandy L Wilson, Kristina Gruden, Jean Peccoud

PLoS One· October 2015

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GenoLIB: a database of biological parts derived from a library of common plasmid features.
Neil R Adames, Mandy L Wilson, Gang Fang, Matthew W Lux, Benjamin S Glick

Nucleic Acids Res· May 2015

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The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.
Michal Galdzicki, Kevin P Clancy, Ernst Oberortner, Matthew Pocock, Jacqueline Y Quinn, Mandy L Wilson

Nat Biotechnol· June 2014

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Development of a domain-specific genetic language to design Chlamydomonas reinhardtii expression vectors.
Mandy L Wilson, Sakiko Okumoto, Laura Adam, Jean Peccoud

Bioinformatics· January 2014

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Sequence verification of synthetic DNA by assembly of sequencing reads.
Mandy L Wilson, Yizhi Cai, Regina Hanlon, Samantha Taylor, Bastien Chevreux

Nucleic Acids Res· January 2013

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A step-by-step introduction to rule-based design of synthetic genetic constructs using GenoCAD.
Mandy L Wilson, Russell Hertzberg, Laura Adam, Jean Peccoud

Methods Enzymol· September 2011

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Strengths and limitations of the federal guidance on synthetic DNA.
Laura Adam, Michael Kozar, Gaelle Letort, Olivier Mirat, Arunima Srivastava, Mandy L Wilson

Nat Biotechnol· March 2011

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GenoCAD for iGEM: a grammatical approach to the design of standard-compliant constructs.
Yizhi Cai, Mandy L Wilson, Jean Peccoud

Nucleic Acids Res· May 2010

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