Publications by authors named "Manny D Bacolod"

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Ovarian tumor cells gain competitive advantage by actively reducing the cellular fitness of microenvironment cells.
Esha Madan, António M Palma, Vignesh Vudatha, Amit Kumar, Praveen Bhoopathi, Manny D Bacolod

Nat Biotechnol· November 2025

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Combinatorial Ubiquitination REal-time PROteolysis (CURE-PROs): A Modular Platform for Generating Reversible, Self-Assembling Bifunctional Targeted Degraders.
Sarah F Giardina, Elena Valdambrini, Pradeep K Singh, Manny D Bacolod, Ganesh Babu-Karunakaran

J Med Chem· April 2024

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Multi-CpG linear regression models to accurately predict paclitaxel and docetaxel activity in cancer cell lines.
Manny D Bacolod, Paul B Fisher, Francis Barany

Adv Cancer Res· March 2023

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MGMT Epigenetics: The Influence of Gene Body Methylation and Other Insights Derived from Integrated Methylomic, Transcriptomic, and Chromatin Analyses in Various Cancer Types.
Manny D Bacolod, Francis Barany

Curr Cancer Drug Targets· December 2021

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The Epigenetic Factors that Drive Cancer Drug Resistance.
Manny D Bacolod

Curr Cancer Drug Targets· December 2021

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A Unified Transcriptional, Pharmacogenomic, and Gene Dependency Approach to Decipher the Biology, Diagnostic Markers, and Therapeutic Targets Associated with Prostate Cancer Metastasis.
Manny D Bacolod, Francis Barany

Cancers (Basel)· October 2021

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Genomic Space of in Human Glioma Revisited: Novel Motifs, Regulatory RNAs, NRF1, 2, and CTCF Involvement in Gene Expression.
Mohammed A Ibrahim Al-Obaide, Viswanath Arutla, Manny D Bacolod, Wei Wang, Ruiwen Zhang

Int J Mol Sci· March 2021

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Can CpG methylation serve as surrogate markers for immune infiltration in cancer?
Manny D Bacolod, Francis Barany, Paul B Fisher

Adv Cancer Res· July 2020

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Application of Multiplex Bisulfite PCR-Ligase Detection Reaction-Real-Time Quantitative PCR Assay in Interrogating Bioinformatically Identified, Blood-Based Methylation Markers for Colorectal Cancer.
Manny D Bacolod, Aashiq H Mirza, Jianmin Huang, Sarah F Giardina, Philip B Feinberg

J Mol Diagn· July 2020

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Pathways- and epigenetic-based assessment of relative immune infiltration in various types of solid tumors.
Manny D Bacolod, Francis Barany, Karsten Pilones, Paul B Fisher, Romulo J de Castro

Adv Cancer Res· May 2020

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Single-molecule detection of cancer mutations using a novel PCR-LDR-qPCR assay.
Cristian Ruiz, Jianmin Huang, Sarah F Giardina, Philip B Feinberg, Aashiq H Mirza, Manny D Bacolod

Hum Mutat· May 2020

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Prediction of blood-based biomarkers and subsequent design of bisulfite PCR-LDR-qPCR assay for breast cancer detection.
Manny D Bacolod, Jianmin Huang, Sarah F Giardina, Philip B Feinberg, Aashiq H Mirza

BMC Cancer· January 2020

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Regulation of neuroblastoma migration, invasion, and in vivo metastasis by genetic and pharmacological manipulation of MDA-9/Syntenin.
Praveen Bhoopathi, Anjan K Pradhan, Manny D Bacolod, Luni Emdad, Devanand Sarkar

Oncogene· October 2019

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Immune infiltration, glioma stratification, and therapeutic implications.
Manny D Bacolod, Sarmistha Talukdar, Luni Emdad, Swadesh K Das, Devanand Sarkar

Transl Cancer Res· October 2016

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Examination of Epigenetic and other Molecular Factors Associated with mda-9/Syntenin Dysregulation in Cancer Through Integrated Analyses of Public Genomic Datasets.
Manny D Bacolod, Swadesh K Das, Upneet K Sokhi, Steven Bradley, David A Fenstermacher

Adv Cancer Res· March 2016

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Analysis of global changes in gene expression induced by human polynucleotide phosphorylase (hPNPase(old-35)).
Upneet K Sokhi, Manny D Bacolod, Luni Emdad, Swadesh K Das, Catherine I Dumur

J Cell Physiol· December 2014

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Astrocyte elevated gene-1 interacts with Akt isoform 2 to control glioma growth, survival, and pathogenesis.
Bin Hu, Luni Emdad, Manny D Bacolod, Timothy P Kegelman, Xue-Ning Shen

Cancer Res· December 2014

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Identification of genes potentially regulated by human polynucleotide phosphorylase (hPNPase old-35) using melanoma as a model.
Upneet K Sokhi, Manny D Bacolod, Santanu Dasgupta, Luni Emdad, Swadesh K Das

PLoS One· June 2014

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Evolutionary dynamics of Polynucelotide phosphorylases.
Upneet K Sokhi, Rob DeSalle, Manny D Bacolod, Swadesh K Das, Santanu Dasgupta

Mol Phylogenet Evol· April 2014

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MDA-9/syntenin is a key regulator of glioma pathogenesis.
Timothy P Kegelman, Swadesh K Das, Bin Hu, Manny D Bacolod, Christine E Fuller

Neuro Oncol· January 2014

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Molecular profiling of colon tumors: the search for clinically relevant biomarkers of progression, prognosis, therapeutics, and predisposition.
Manny D Bacolod, Francis Barany

Ann Surg Oncol· December 2011

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Gene dysregulations driven by somatic copy number aberrations-biological and clinical implications in colon tumors: a paper from the 2009 William Beaumont Hospital Symposium on Molecular Pathology.
Manny D Bacolod, Francis Barany

J Mol Diagn· September 2010

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Association of survival and disease progression with chromosomal instability: a genomic exploration of colorectal cancer.
Michal Sheffer, Manny D Bacolod, Or Zuk, Sarah F Giardina, Hanna Pincas

Proc Natl Acad Sci U S A· April 2009

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Emerging paradigms in cancer genetics: some important findings from high-density single nucleotide polymorphism array studies.
Manny D Bacolod, Gunter S Schemmann, Sarah F Giardina, Philip Paty, Daniel A Notterman

Cancer Res· February 2009

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CpG island methylator phenotype associates with low-degree chromosomal abnormalities in colorectal cancer.
Yu-Wei Cheng, Hanna Pincas, Manny D Bacolod, Gunter Schemmann, Sarah F Giardina

Clin Cancer Res· October 2008

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