Publications by authors named "Manoj Samanta"

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More Questions than Answers: Continued Critical Reanalysis of Fredrickson et al.'s Studies of Genomics and Well-Being.
Nicholas J L Brown, Douglas A MacDonald, Manoj P Samanta, Harris L Friedman, James C Coyne

PLoS One· July 2017

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Sternopygus macrurus electric organ transcriptome and cell size exhibit insensitivity to short-term electrical inactivity.
Robert Güth, Matthew Pinch, Manoj P Samanta, Alexander Chaidez, Graciela A Unguez

J Physiol Paris· October 2016

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Properties of skeletal muscle in the teleost Sternopygus macrurus are unaffected by short-term electrical inactivity.
Robert Güth, Alexander Chaidez, Manoj P Samanta, Graciela A Unguez

Physiol Genomics· September 2016

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Saccular Transcriptome Profiles of the Seasonal Breeding Plainfin Midshipman Fish (Porichthys notatus), a Teleost with Divergent Sexual Phenotypes.
Joshua Faber-Hammond, Manoj P Samanta, Elizabeth A Whitchurch, Dustin Manning, Joseph A Sisneros

PLoS One· June 2016

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Sequence Analysis and Comparative Study of the Protein Subunits of Archaeal RNase P.
Manoj P Samanta, Stella M Lai, Charles J Daniels, Venkat Gopalan

Biomolecules· April 2016

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The myogenic electric organ of Sternopygus macrurus: a non-contractile tissue with a skeletal muscle transcriptome.
Matthew Pinch, Robert Güth, Manoj P Samanta, Alexander Chaidez, Graciela A Unguez

PeerJ· April 2016

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Second-Generation Linkage Maps for the Pacific Oyster Crassostrea gigas Reveal Errors in Assembly of Genome Scaffolds.
Dennis Hedgecock, Grace Shin, Andrew Y Gracey, David Van Den Berg, Manoj P Samanta

G3 (Bethesda)· August 2015

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Unique patterns of transcript and miRNA expression in the South American strong voltage electric eel (Electrophorus electricus).
Lindsay L Traeger, Jeremy D Volkening, Howell Moffett, Jason R Gallant, Po-Hao Chen, Manoj P Samanta

BMC Genomics· March 2015

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A critical reanalysis of the relationship between genomics and well-being.
Nicholas J L Brown, Douglas A MacDonald, Manoj Pratim Samanta, Harris L Friedman, James C Coyne

Proc Natl Acad Sci U S A· September 2014

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Nonhuman genetics. Genomic basis for the convergent evolution of electric organs.
Jason R Gallant, Lindsay L Traeger, Jeremy D Volkening, Howell Moffett, Po-Hao Chen, Manoj P Samanta

Science· June 2014

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High resolution mapping of Twist to DNA in Drosophila embryos: Efficient functional analysis and evolutionary conservation.
Anil Ozdemir, Katherine I Fisher-Aylor, Shirley Pepke, Manoj Samanta, Leslie Dunipace

Genome Res· April 2011

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The Ectocarpus genome and the independent evolution of multicellularity in brown algae.
J Mark Cock, Lieven Sterck, Pierre Rouzé, Delphine Scornet, Andrew E Allen, Manoj Samanta

Nature· June 2010

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Analysis of antisense expression by whole genome tiling microarrays and siRNAs suggests mis-annotation of Arabidopsis orphan protein-coding genes.
Casey R Richardson, Qing-Jun Luo, Viktoria Gontcharova, Ying-Wen Jiang, Manoj Samanta

PLoS One· May 2010

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Evidence for antisense transcription associated with microRNA target mRNAs in Arabidopsis.
Qing-Jun Luo, Manoj P Samanta, Fatih Köksal, Jaroslav Janda, David W Galbraith

PLoS Genet· April 2009

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SpBase: the sea urchin genome database and web site.
R Andrew Cameron, Manoj Samanta, Autumn Yuan, Dong He, Eric Davidson

Nucleic Acids Res· January 2009

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Computational and transcriptional evidence for microRNAs in the honey bee genome.
Daniel B Weaver, Juan M Anzola, Jay D Evans, Jeffrey G Reid, Justin T Reese, Manoj P Samanta

Genome Biol· February 2008

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Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses.
Thomas Mock, Manoj Pratim Samanta, Vaughn Iverson, Chris Berthiaume, Matthew Robison

Proc Natl Acad Sci U S A· February 2008

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In-depth query of large genomes using tiling arrays.
Manoj Pratim Samanta, Waraporn Tongprasit, Viktor Stolc

Methods Mol Biol· August 2007

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Identification of an in vitro transcription-based artifact affecting oligonucleotide microarrays.
David C Nelson, Dana J Wohlbach, Matthew J Rodesch, Viktor Stolc, Michael R Sussman, Manoj P Samanta

FEBS Lett· July 2007

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The genome of the sea urchin Strongylocentrotus purpuratus.

Science· November 2006

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The transcriptome of the sea urchin embryo.
Manoj P Samanta, Waraporn Tongprasit, Sorin Istrail, R Andrew Cameron, Qiang Tu

Science· November 2006

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Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway.
Manoj Pratim Samanta, Waraporn Tongprasit, Himanshu Sethi, Chen-Shan Chin, Viktor Stolc

Proc Natl Acad Sci U S A· March 2006

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Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping.
Thomas E Royce, Joel S Rozowsky, Paul Bertone, Manoj Samanta, Viktor Stolc

Trends Genet· August 2005

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Genome-wide transcriptional analysis of flagellar regeneration in Chlamydomonas reinhardtii identifies orthologs of ciliary disease genes.
Viktor Stolc, Manoj Pratim Samanta, Waraporn Tongprasit, Wallace F Marshall

Proc Natl Acad Sci U S A· March 2005

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Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays.
Viktor Stolc, Manoj Pratim Samanta, Waraporn Tongprasit, Himanshu Sethi, Shoudan Liang

Proc Natl Acad Sci U S A· March 2005

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