Publications by authors named "Marc Hellmuth"

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Orthology and near-cographs in the context of phylogenetic networks.
Anna Lindeberg, Guillaume E Scholz, Nicolas Wieseke, Marc Hellmuth

Algorithms Mol Biol· October 2025

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Simplifying and Characterizing DAGs and Phylogenetic Networks via Least Common Ancestor Constraints.
Anna Lindeberg, Marc Hellmuth

Bull Math Biol· February 2025

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The Theory of Gene Family Histories.
Marc Hellmuth, Peter F Stadler

Methods Mol Biol· May 2024

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Clustering systems of phylogenetic networks.
Marc Hellmuth, David Schaller, Peter F Stadler

Theory Biosci· November 2023

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Relative timing information and orthology in evolutionary scenarios.
David Schaller, Tom Hartmann, Manuel Lafond, Peter F Stadler, Nicolas Wieseke, Marc Hellmuth

Algorithms Mol Biol· November 2023

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Best Match Graphs With Binary Trees.
David Schaller, Manuela Geis, Marc Hellmuth, Peter F Stadler

IEEE/ACM Trans Comput Biol Bioinform· June 2023

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Generic Context-Aware Group Contributions.
Christoph Flamm, Marc Hellmuth, Daniel Merkle, Nikolai Nojgaard, Peter F Stadler

IEEE/ACM Trans Comput Biol Bioinform· February 2022

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A simpler linear-time algorithm for the common refinement of rooted phylogenetic trees on a common leaf set.
David Schaller, Marc Hellmuth, Peter F Stadler

Algorithms Mol Biol· December 2021

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Heuristic algorithms for best match graph editing.
David Schaller, Manuela Geiß, Marc Hellmuth, Peter F Stadler

Algorithms Mol Biol· August 2021

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Cayley Graphs of Semigroups Applied to Atom Tracking in Chemistry.
Nikolai Nøjgaard, Walter Fontana, Marc Hellmuth, Daniel Merkle

J Comput Biol· July 2021

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Indirect identification of horizontal gene transfer.
David Schaller, Manuel Lafond, Peter F Stadler, Nicolas Wieseke, Marc Hellmuth

J Math Biol· July 2021

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Corrigendum to "Best match graphs".
David Schaller, Manuela Geiß, Edgar Chávez, Marcos González Laffitte, Alitzel López Sánchez, Marc Hellmuth

J Math Biol· April 2021

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Complete Characterization of Incorrect Orthology Assignments in Best Match Graphs.
David Schaller, Manuela Geiß, Peter F Stadler, Marc Hellmuth

J Math Biol· February 2021

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Reconstruction of time-consistent species trees.
Manuel Lafond, Marc Hellmuth

Algorithms Mol Biol· August 2020

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Best match graphs and reconciliation of gene trees with species trees.
Manuela Geiß, Marcos E González Laffitte, Alitzel López Sánchez, Dulce I Valdivia, Marc Hellmuth

J Math Biol· April 2020

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From pairs of most similar sequences to phylogenetic best matches.
Peter F Stadler, Manuela Geiß, David Schaller, Alitzel López Sánchez, Marcos González Laffitte, Marc Hellmuth

Algorithms Mol Biol· April 2020

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Reciprocal best match graphs.
Manuela Geiß, Peter F Stadler, Marc Hellmuth

J Math Biol· February 2020

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Reconciling event-labeled gene trees with MUL-trees and species networks.
Marc Hellmuth, Katharina T Huber, Vincent Moulton

J Math Biol· October 2019

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Alternative characterizations of Fitch's xenology relation.
Marc Hellmuth, Carsten R Seemann

J Math Biol· August 2019

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Best match graphs.
Manuela Geiß, Edgar Chávez, Marcos González Laffitte, Alitzel López Sánchez, Bärbel M R Stadler, Marc Hellmuth

J Math Biol· June 2019

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Reconstructing gene trees from Fitch's xenology relation.
Manuela Geiß, John Anders, Peter F Stadler, Nicolas Wieseke, Marc Hellmuth

J Math Biol· November 2018

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Inferring phylogenetic trees from the knowledge of rare evolutionary events.
Marc Hellmuth, Maribel Hernandez-Rosales, Yangjing Long, Peter F Stadler

J Math Biol· June 2018

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Time-consistent reconciliation maps and forbidden time travel.
Nikolai Nøjgaard, Manuela Geiß, Daniel Merkle, Peter F Stadler, Nicolas Wieseke, Marc Hellmuth

Algorithms Mol Biol· February 2018

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Biologically feasible gene trees, reconciliation maps and informative triples.
Marc Hellmuth

Algorithms Mol Biol· August 2017

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On the performance of de novo pathway enrichment.
Richa Batra, Nicolas Alcaraz, Kevin Gitzhofer, Josch Pauling, Henrik J Ditzel, Marc Hellmuth

NPJ Syst Biol Appl· March 2017

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