Publications by authors named "Marc Perry"

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Making genomic data FAIR through effective Data Portals.
Matthew L Speir, Wei Kheng Teh, Marc D Perry, Rachel Schwartz, Parisa Nejad

Sci Data· November 2025

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SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine-learning method.
Adriano de Bernardi Schneider, Michelle Su, Angie S Hinrichs, Jade Wang, Helly Amin, Marc D Perry

Virus Evol· January 2024

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Author Correction: Genomic basis for RNA alterations in cancer.

Nature· February 2023

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The 5-Hydroxymethylcytosine Landscape of Prostate Cancer.
Martin Sjöström, Shuang G Zhao, Samuel Levy, Meng Zhang, Yuhong Ning, Marc D Perry

Cancer Res· November 2022

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Prognosis Associated With Luminal and Basal Subtypes of Metastatic Prostate Cancer.
Rahul Aggarwal, Nicholas R Rydzewski, Li Zhang, Adam Foye, Won Kim, Marc D Perry

JAMA Oncol· November 2021

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Framework for quality assessment of whole genome cancer sequences.
Justin P Whalley, Ivo Buchhalter, Esther Rheinbay, Keiran M Raine, Miranda D Stobbe, Marc D Perry

Nat Commun· October 2020

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The DNA methylation landscape of advanced prostate cancer.
Shuang G Zhao, William S Chen, Haolong Li, Adam Foye, Meng Zhang, Marc D Perry

Nat Genet· August 2020

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Genomic basis for RNA alterations in cancer.

Nature· February 2020

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Genomic Hallmarks and Structural Variation in Metastatic Prostate Cancer.
David A Quigley, Ha X Dang, Shuang G Zhao, Paul Lloyd, Rahul Aggarwal, Marc D Perry

Cell· October 2018

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Genomic Hallmarks and Structural Variation in Metastatic Prostate Cancer.
David A Quigley, Ha X Dang, Shuang G Zhao, Paul Lloyd, Rahul Aggarwal, Marc D Perry

Cell· July 2018

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Cloud-based uniform ChIP-Seq processing tools for modENCODE and ENCODE.
Quang M Trinh, Fei-Yang Arthur Jen, Ziru Zhou, Kar Ming Chu, Marc D Perry

BMC Genomics· July 2013

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Kinetic studies on the reaction of chlorosulfonyl isocyanate with monofluoroalkenes: experimental evidence for both stepwise and concerted mechanisms and a pre-equilibrium complex on the reaction pathway.
Dale F Shellhamer, Summer A Bunting, Kelli R Hickle, Parker C Horn, Jacob C Milligan, Marc C Perry

J Org Chem· January 2013

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ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.
Stephen G Landt, Georgi K Marinov, Anshul Kundaje, Pouya Kheradpour, Florencia Pauli, Marc D Perry

Genome Res· September 2012

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modMine: flexible access to modENCODE data.
Sergio Contrino, Richard N Smith, Daniela Butano, Adrian Carr, Fengyuan Hu, Marc D Perry

Nucleic Acids Res· January 2012

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The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details.
Nicole L Washington, E O Stinson, Marc D Perry, Peter Ruzanov, Sergio Contrino

Database (Oxford)· November 2011

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An assessment of histone-modification antibody quality.
Thea A Egelhofer, Aki Minoda, Sarit Klugman, Kyungjoon Lee, Paulina Kolasinska-Zwierz, Marc Perry

Nat Struct Mol Biol· January 2011

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Identification of functional elements and regulatory circuits by Drosophila modENCODE.

Science· December 2010

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Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.
Mark B Gerstein, Zhi John Lu, Eric L Van Nostrand, Chao Cheng, Bradley I Arshinoff, Marc Perry

Science· December 2010

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Comparative proteomics profiling of a phospholamban mutant mouse model of dilated cardiomyopathy reveals progressive intracellular stress responses.
Anthony O Gramolini, Thomas Kislinger, Rasoul Alikhani-Koopaei, Vincent Fong, Natalie J Thompson, Marc Perry

Mol Cell Proteomics· March 2008

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Once-weekly dalbavancin versus standard-of-care antimicrobial regimens for treatment of skin and soft-tissue infections.
Elyse Seltzer, Mary Beth Dorr, Beth P Goldstein, Marc Perry, James A Dowell

Clin Infect Dis· November 2003

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Optically active iridium imidazol-2-ylidene-oxazoline complexes: preparation and use in asymmetric hydrogenation of arylalkenes.
Marc C Perry, Xiuhua Cui, Mark T Powell, Duen-Ren Hou, Joseph H Reibenspies

J Am Chem Soc· January 2003

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Extragenic suppressors of a dominant masculinizing her-1 mutation in C. elegans identify two new genes that affect sex determination in different ways.
James Manser, William B Wood, Marc D Perry

Genesis· November 2002

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