Publications by authors named "Marcia Kalish"

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Optimized phylogenetic clustering of HIV-1 sequence data for public health applications.
Connor Chato, Yi Feng, Yuhua Ruan, Hui Xing, Joshua Herbeck, Marcia Kalish

PLoS Comput Biol· November 2022

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Public health in genetic spaces: a statistical framework to optimize cluster-based outbreak detection.
Connor Chato, Marcia L Kalish, Art F Y Poon

Virus Evol· January 2020

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HIV-1 Transmission Clustering and Phylodynamics Highlight the Important Role of Young Men Who Have Sex with Men.
Ann M Dennis, Erik Volz, A S Md Simon D W Frost, Mukarram Hossain, Art F Y Poon, Marcia L Kalish

AIDS Res Hum Retroviruses· October 2018

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Tracing the epidemic history of HIV-1 CRF01_AE clusters using near-complete genome sequences.
Xingguang Li, Haizhou Liu, Lu Liu, Yi Feng, Marcia L Kalish

Sci Rep· June 2017

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Reconstructing the HIV-1 CRF02_AG and CRF06_cpx epidemics in Burkina Faso and West Africa using early samples.
Gonzalo Yebra, Marcia L Kalish, Andrew J Leigh Brown

Infect Genet Evol· December 2016

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Integrated prevention of mother-to-child HIV transmission services, antiretroviral therapy initiation, and maternal and infant retention in care in rural north-central Nigeria: a cluster-randomised controlled trial.
Muktar H Aliyu, Meridith Blevins, Carolyn M Audet, Marcia Kalish, Usman I Gebi

Lancet HIV· May 2016

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Genomic characterization of two novel HIV-1 unique (CRF01_AE/B) recombinant forms among men who have sex with men in Beijing, China.
Zheng Li, Jia Li, Yi Feng, Marcia L Kalish, Hongyan Lu

AIDS Res Hum Retroviruses· September 2015

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Molecular epidemiology of HIV-1 in Jilin province, northeastern China: emergence of a new CRF07_BC transmission cluster and intersubtype recombinants.
Xingguang Li, Xihui Zang, Chuanyi Ning, Yi Feng, Cunxin Xie, Marcia L Kalish

PLoS One· June 2015

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Viral co-infections in high-risk communities of Pakistan.
Adil A Shah, Syed H Abidi, Marcia L Kalish, Sten H Vermund, Syed Ali

Lancet HIV· April 2015

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Genomic characterization of two novel HIV-1 second-generation recombinant forms among men who have sex with men in Beijing, China.
Zheng Li, Huamian Wei, Yi Feng, Jia Li, Marcia L Kalish

AIDS Res Hum Retroviruses· March 2015

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HIV-1 subtype A gag variability and epitope evolution.
Syed Hani Abidi, Marcia L Kalish, Farhat Abbas, Sarah Rowland-Jones, Syed Ali

PLoS One· January 2015

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Recombinant viruses initiated the early HIV-1 epidemic in Burkina Faso.
Peter N Fonjungo, Marcia L Kalish, Amanda Schaefer, Mark Rayfield, Jennifer Mika

PLoS One· November 2014

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Optimizing PMTCT service delivery in rural North-Central Nigeria: protocol and design for a cluster randomized study.
Muktar H Aliyu, Meridith Blevins, Carolyn Audet, Bryan E Shepherd, Adiba Hassan, Marcia Kalish

Contemp Clin Trials· September 2013

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Estimating the rate of intersubtype recombination in early HIV-1 group M strains.
Melissa J Ward, Samantha J Lycett, Marcia L Kalish, Andrew Rambaut, Andrew J Leigh Brown

J Virol· February 2013

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Prevalence of drug resistance-related polymorphisms in treatment-naive individuals infected with nonsubtype B HIV type 1 in Cameroon.
Ae S Youngpairoj, George A Alemnji, Laura T Eno, Esther J Lyonga, Mbia A Eloundou, Marcia L Kalish

AIDS Res Hum Retroviruses· July 2012

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Practice of feeding premasticated food to infants: a potential risk factor for HIV transmission.
Aditya H Gaur, Kenneth L Dominguez, Marcia L Kalish, Delia Rivera-Hernandez, Marion Donohoe

Pediatrics· August 2009

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Coinfection with HIV-1 and simian foamy virus in West Central Africans.
William M Switzer, Albert D Garcia, Chunfu Yang, Anthony Wright, Marcia L Kalish

J Infect Dis· May 2008

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Evaluation of dried blood spots for human immunodeficiency virus type 1 drug resistance testing.
Amanda McNulty, Cheryl Jennings, Diane Bennett, Joseph Fitzgibbon, James W Bremer, Marcia L Kalish

J Clin Microbiol· February 2007

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Chimpanzee adenovirus antibodies in humans, sub-Saharan Africa.
Zhiquan Xiang, Yan Li, Ann Cun, Wei Yang, Susan Ellenberg, Marcia L Kalish

Emerg Infect Dis· October 2006

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HIV genetic diversity in Cameroon: possible public health importance.
Clement B Ndongmo, Danuta Pieniazek, Mona Holberg-Petersen, Carol Holm-Hansen, Leopold Zekeng, Marcia L Kalish

AIDS Res Hum Retroviruses· August 2006

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Molecular analysis of HIV strains from a cluster of worker infections in the adult film industry, Los Angeles 2004.
John T Brooks, Kenneth E Robbins, Ae S Youngpairoj, Harlan Rotblatt, Peter R Kerndt, Marcia L Kalish

AIDS· April 2006

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Genotypic and phenotypic analyses of human immunodeficiency virus type 1 in antiretroviral drug-naive Nigerian patients.
Simon M Agwale, Clement Zeh, Ellen Paxinos, Lilian Odama, Danuta Pienazek, Marcia L Kalish

AIDS Res Hum Retroviruses· January 2006

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Central African hunters exposed to simian immunodeficiency virus.
Marcia L Kalish, Nathan D Wolfe, Clement B Ndongmo, Janet McNicholl, Kenneth E Robbins

Emerg Infect Dis· December 2005

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Divergent HIV and simian immunodeficiency virus surveillance, Zaire.
Amanda Schaefer, Kenneth E Robbins, Eugene Nzila Nzilambi, Michael E St Louis, Thomas C Quinn, Marcia L Kalish

Emerg Infect Dis· September 2005

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Nigerian HIV type 2 subtype A and B from heterotypic HIV type 1 and HIV type 2 or monotypic HIV type 2 infections.
Clement Zeh, Danuta Pieniazek, Simon M Agwale, Kenneth E Robbins, Lillian Odama, Marcia L Kalish

AIDS Res Hum Retroviruses· January 2005

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