Publications by authors named "Marcin Feder"

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Novel inhibitors of the rRNA ErmC' methyltransferase to block resistance to macrolides, lincosamides, streptogramine B antibiotics.
Ilona P Foik, Irina Tuszynska, Marcin Feder, Elzbieta Purta, Filip Stefaniak

Eur J Med Chem· February 2018

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Relationship between drug structure and minimal inhibitory concentration value used for acceptable daily intake analysis.
Tomasz Grabowski, Jerzy Jan Jaroszewski, Shayne Cox Gad, Marcin Feder

Int J Toxicol· September 2015

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Ligand-optimized homology models of D₁ and D₂ dopamine receptors: application for virtual screening.
Marcin Kołaczkowski, Adam Bucki, Marcin Feder, Maciej Pawłowski

J Chem Inf Model· March 2013

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Correlation between in silico physicochemical characteristics of drugs and their mean residence time in human and dog.
Tomasz Grabowski, Jerzy Jan Jaroszewski, Shayne Cox Gad, Marcin Feder

Int J Toxicol· June 2012

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Qualitative structure residue relationship analysis in the determination of the maximum residue limit of veterinary drugs.
Tomasz Grabowski, Jerzy Jan Jaroszewski, Walerian Piotrowski, Marcin Feder

Chemosphere· April 2012

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Virtual screening and experimental verification to identify potential inhibitors of the ErmC methyltransferase responsible for bacterial resistance against macrolide antibiotics.
Marcin Feder, Elzbieta Purta, Lukasz Koscinski, Sonja Cubrilo, Gordana Maravic Vlahovicek

ChemMedChem· February 2008

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Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily.
Elena M Ibryashkina, Marina V Zakharova, Vladimir B Baskunov, Ekaterina S Bogdanova, Maxim O Nagornykh, Marcin Feder

BMC Struct Biol· July 2007

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Identification of a missing sequence and functionally important residues of 16S rRNA:m(1)A1408 methyltransferase KamB that causes bacterial resistance to aminoglycoside antibiotics.
Lukasz Koscinski, Marcin Feder, Janusz M Bujnicki

Cell Cycle· May 2007

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Characterization of prmt7alpha and beta isozymes from Chinese hamster cells sensitive and resistant to topoisomerase II inhibitors.
Laurent Gros, Axelle Renodon-Cornière, Bruno Robert de Saint Vincent, Marcin Feder, Janusz M Bujnicki

Biochim Biophys Acta· November 2006

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Complete cap 4 formation is not required for viability in Trypanosoma brucei.
Jesse R Zamudio, Bidyottam Mittra, Gusti M Zeiner, Marcin Feder, Janusz M Bujnicki

Eukaryot Cell· June 2006

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FRankenstein becomes a cyborg: the automatic recombination and realignment of fold recognition models in CASP6.
Jan Kosinski, Michal J Gajda, Iwona A Cymerman, Michal A Kurowski, Marcin Pawlowski, Marcin Feder

Proteins· May 2006

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Structural model for the multisubunit Type IC restriction-modification DNA methyltransferase M.EcoR124I in complex with DNA.
Agnieszka Obarska, Alex Blundell, Marcin Feder, Stepánka Vejsadová, Eva Sisáková

Nucleic Acids Res· April 2006

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Phylogenomic analysis of the GIY-YIG nuclease superfamily.
Stanislaw Dunin-Horkawicz, Marcin Feder, Janusz M Bujnicki

BMC Genomics· April 2006

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MODOMICS: a database of RNA modification pathways.
Stanislaw Dunin-Horkawicz, Anna Czerwoniec, Michal J Gajda, Marcin Feder, Henri Grosjean

Nucleic Acids Res· January 2006

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The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function.
Jan Kosinski, Marcin Feder, Janusz M Bujnicki

BMC Bioinformatics· July 2005

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Sequence-structure-function relationships of a tRNA (m7G46) methyltransferase studied by homology modeling and site-directed mutagenesis.
Elzbieta Purta, Françoise van Vliet, Catherine Tricot, Lara G De Bie, Marcin Feder

Proteins· May 2005

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Identification of a new family of putative PD-(D/E)XK nucleases with unusual phylogenomic distribution and a new type of the active site.
Marcin Feder, Janusz M Bujnicki

BMC Genomics· February 2005

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Sequence-structure-function studies of tRNA:m5C methyltransferase Trm4p and its relationship to DNA:m5C and RNA:m5U methyltransferases.
Janusz M Bujnicki, Marcin Feder, Chastity L Ayres, Kent L Redman

Nucleic Acids Res· May 2004

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A "FRankenstein's monster" approach to comparative modeling: merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation.
Jan Kosinski, Iwona A Cymerman, Marcin Feder, Michal A Kurowski, Joanna M Sasin

Proteins· January 2004

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Mutational analysis defines the roles of conserved amino acid residues in the predicted catalytic pocket of the rRNA:m6A methyltransferase ErmC'.
Gordana Maravić, Marcin Feder, Sándor Pongor, Mirna Flögel, Janusz M Bujnicki

J Mol Biol· September 2003

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Alanine-scanning mutagenesis of the predicted rRNA-binding domain of ErmC' redefines the substrate-binding site and suggests a model for protein-RNA interactions.
Gordana Maravić, Janusz M Bujnicki, Marcin Feder, Sándor Pongor, Mirna Flögel

Nucleic Acids Res· August 2003

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Characterization of the cofactor-binding site in the SPOUT-fold methyltransferases by computational docking of S-adenosylmethionine to three crystal structures.
Michal A Kurowski, Joanna M Sasin, Marcin Feder, Janusz Debski, Janusz M Bujnicki

BMC Bioinformatics· March 2003

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Molecular phylogenetics of the RrmJ/fibrillarin superfamily of ribose 2'-O-methyltransferases.
Marcin Feder, Jakub Pas, Lucjan S Wyrwicz, Janusz M Bujnicki

Gene· January 2003

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Structure prediction and phylogenetic analysis of a functionally diverse family of proteins homologous to the MT-A70 subunit of the human mRNA:m(6)A methyltransferase.
Janusz M Bujnicki, Marcin Feder, Monika Radlinska, Robert M Blumenthal

J Mol Evol· October 2002

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Errors in the D. radiodurans large ribosomal subunit structure detected by protein fold-recognition and structure validation tools.
Janusz M Bujnicki, Marcin Feder, Leszek Rychlewski, Daniel Fischer

FEBS Lett· August 2002

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