Publications by authors named "Marcin Imielinski"

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Passenger mutations link cellular origin and transcriptional identity in human lung adenocarcinomas.
Sukanya Panja, Padmaja Mantri, Kofi Ennu Johnson, Juan Sebastian Andrade-Martinez, Soo-Ryum Yang

Nat Genet· December 2025

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Chromosome shattering in cancer.
Stanley Clarke, Marcin Imieliński

Science· December 2025

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Pan-cancer immune and stromal deconvolution predicts clinical outcomes and mutation profiles.
Bhavneet Bhinder, Verena Friedl, Sunantha Sethuraman, Davide Risso, Kami E Chiotti, Marcin Imielinski

Sci Rep· July 2025

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Three-dimensional genome landscape of primary human cancers.
Kathryn E Yost, Yanding Zhao, King L Hung, Kaiyuan Zhu, Duo Xu

Nat Genet· May 2025

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APOBEC affects tumor evolution and age at onset of lung cancer in smokers.
Tongwu Zhang, Jian Sang, Phuc H Hoang, Wei Zhao, Jennifer Rosenbaum, Marcin Imielinski

Nat Commun· May 2025

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A sequence context-based approach for classifying tumor structural variants without paired normal samples.
Wolu Chukwu, Siyun Lee, Alexander Crane, Shu Zhang, Sophie Webster, Marcin Imielinski

Cell Rep Methods· March 2025

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A complex phylogeny of lineage plasticity in metastatic castration resistant prostate cancer.
Jones T Nauseef, Timothy R Chu, William F Hooper, Alicia Alonso, Ali Oku, Marcin Imielinski

NPJ Precis Oncol· March 2025

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Modeling lung adenocarcinoma metastases using patient-derived organoids.
Yuan Liu, Manendra Lankadasari, Joel Rosiene, Kofi E Johnson, Juan Zhou, Marcin Imielinski

Cell Rep Med· October 2024

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Comparison of germline and somatic structural variants in cancers reveal systematic differences in variant generating and selection processes.
Wolu Chukwu, Siyun Lee, Alexander Crane, Shu Zhang, Sophie Webster, Marcin Imielinski

bioRxiv· June 2024

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Ultrasensitive plasma-based monitoring of tumor burden using machine-learning-guided signal enrichment.
Adam J Widman, Minita Shah, Amanda Frydendahl, Daniel Halmos, Cole C Khamnei, Marcin Imielinski

Nat Med· June 2024

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APOBEC shapes tumor evolution and age at onset of lung cancer in smokers.
Tongwu Zhang, Jian Sang, Phuc H Hoang, Wei Zhao, Jennifer Rosenbaum, Marcin Imielinski

bioRxiv· April 2024

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The importance of escalating molecular diagnostics in patients with low-grade pediatric brain cancer.
Majd Al Assaad, Gunes Gundem, Benjamin Liechty, Andrea Sboner, Juan Medina, Marcin Imielinski

Cold Spring Harb Mol Case Stud· December 2023

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Most large structural variants in cancer genomes can be detected without long reads.
Zi-Ning Choo, Julie M Behr, Aditya Deshpande, Kevin Hadi, Xiaotong Yao

Nat Genet· December 2023

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Long-molecule scars of backup DNA repair in BRCA1- and BRCA2-deficient cancers.
Jeremy Setton, Kevin Hadi, Zi-Ning Choo, Katherine S Kuchin, Huasong Tian

Nature· September 2023

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Faster detection of somatic structural variants.
Zi-Ning Choo, Marcin Imieliński

Nat Biomed Eng· July 2023

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Molecular Evolution of Classic Hodgkin Lymphoma Revealed Through Whole-Genome Sequencing of Hodgkin and Reed Sternberg Cells.
Francesco Maura, Bachisio Ziccheddu, Jenny Z Xiang, Bhavneet Bhinder, Joel Rosiene, Marcin Imielinski

Blood Cancer Discov· May 2023

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Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.
Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah A Wala, Ofer Shapira, Marcin Imielinski

Nature· February 2023

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Author Correction: The evolutionary history of 2,658 cancers.
Moritz Gerstung, Clemency Jolly, Ignaty Leshchiner, Stefan C Dentro, Santiago Gonzalez, Marcin Imielinski

Nature· February 2023

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Author Correction: Patterns of somatic structural variation in human cancer genomes.
Yilong Li, Nicola D Roberts, Jeremiah A Wala, Ofer Shapira, Steven E Schumacher, Marcin Imielinski

Nature· February 2023

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Genomic signature of Fanconi anaemia DNA repair pathway deficiency in cancer.
Andrew L H Webster, Mathijs A Sanders, Krupa Patel, Ralf Dietrich, Raymond J Noonan, Marcin Imielinski

Nature· December 2022

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Whole-genome characterization of myoepithelial carcinomas of the soft tissue.
Joanna Cyrta, Joel Rosiene, Rohan Bareja, Sarah Kudman, Wael Al Zoughbi, Marcin Imielinski

Cold Spring Harb Mol Case Stud· December 2022

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Identifying synergistic high-order 3D chromatin conformations from genome-scale nanopore concatemer sequencing.
Aditya S Deshpande, Netha Ulahannan, Matthew Pendleton, Xiaoguang Dai, Lynn Ly

Nat Biotechnol· October 2022

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Publisher Correction: Recurrent somatic mutations as predictors of immunotherapy response.
Zoran Z Gajic, Aditya Deshpande, Mateusz Legut, Marcin Imieliński, Neville E Sanjana

Nat Commun· August 2022

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Recurrent somatic mutations as predictors of immunotherapy response.
Zoran Z Gajic, Aditya Deshpande, Mateusz Legut, Marcin Imieliński, Neville E Sanjana

Nat Commun· July 2022

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Somatic whole genome dynamics of precancer in Barrett's esophagus reveals features associated with disease progression.
Thomas G Paulson, Patricia C Galipeau, Kenji M Oman, Carissa A Sanchez, Mary K Kuhner, Marcin Imielinski

Nat Commun· April 2022

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