Publications by authors named "Maria Balkey"

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Harnessing methods, data analysis, and near-real-time wastewater monitoring for enhanced public health response using high throughput sequencing.
Padmini Ramachandran, Tunc Kayikcioglu, Tamara Walsky, Kathryn Judy, Jasmine Amirzadegan, Maria Balkey

Environ Res· August 2025

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217 closed Salmonella reference genomes using PacBio sequencing.
Yan Luo, Jae Hee Jang, Maria Balkey, Maria Hoffmann

BMC Genom Data· February 2025

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Comparative genomics and virulence potential of Campylobacter coli strains isolated from different sources over 25 years in Brazil.
Carolina Nogueira Gomes, Andrei Giacchetto Felice, Giovana do Nascimento Pereira, Victor Augusto Sallum Ceballos, Siomar de Castro Soares, Maria Balkey

BMC Microbiol· November 2024

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A Comprehensive Guide to Quality Assessment and Data Submission for Genomic Surveillance of Enteric Pathogens.
Ruth E Timme, Tina Pfefer, C Hope Bias, Marc W Allard, Xinyang Huang, Maria Balkey

Methods Mol Biol· September 2024

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SARS-CoV-2 wastewater variant surveillance: pandemic response leveraging FDA's GenomeTrakr network.
Ruth E Timme, Jacquelina Woods, Jessica L Jones, Kevin R Calci, Rachel Rodriguez, Maria Balkey

mSystems· June 2024

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Genomic analysis of a cAmpC (CMY-41)-producing Citrobacter freundii ST64 isolated from patient.
Daniel F M Monte, Narjol Gonzalez-Escalona, Guojie Cao, Geany Targino de Souza Pedrosa, Mauro M S Saraiva, Maria Balkey

Lett Appl Microbiol· February 2024

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Draft Genome Sequences of 17 Campylobacter coli Strains Isolated from Animal and Food Sources in Brazil.
Carolina Nogueira Gomes, Sheila da Silva Duque, Maria Balkey, Marc Willian Allard, Juliana Pfrimer Falcão

Microbiol Resour Announc· July 2023

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Genomic and phylogenetic analysis of Salmonella enterica serovar Enteritidis strains linked to multiple outbreaks in Brazil.
Guojie Cao, Maria Balkey, Qing Jin, Eric Brown, Marc Allard

Lett Appl Microbiol· January 2023

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Interpretative Labor and the Bane of Nonstandardized Metadata in Public Health Surveillance and Food Safety.
James B Pettengill, Jennifer Beal, Maria Balkey, Marc Allard, Hugh Rand

Clin Infect Dis· October 2021

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Draft Genome Sequences of 80 Salmonella enterica Serovar Infantis Strains Isolated from Food, Environmental, Human, and Veterinary Sources in Brazil.
Felipe Pinheiro Vilela, Bruno Rocha Pribul, Dália Dos Prazeres Rodrigues, Maria Balkey, Marc Allard

Microbiol Resour Announc· June 2021

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Genomic investigation of antimicrobial resistance determinants and virulence factors in Salmonella enterica serovars isolated from contaminated food and human stool samples in Brazil.
Adma Nadja Ferreira de Melo, Daniel F M Monte, Geany Targino de Souza Pedrosa, Maria Balkey, Qing Jin

Int J Food Microbiol· April 2021

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Draft Genome Sequences of 62 Staphylococcus aureus Isolates Associated with Four Foodborne Outbreaks in the United States.
Jennifer Hait, Guojie Cao, Maria Balkey, George Kastanis, Phillip Curry

Microbiol Resour Announc· March 2021

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Nipah virus dynamics in bats and implications for spillover to humans.
Jonathan H Epstein, Simon J Anthony, Ariful Islam, A Marm Kilpatrick, Shahneaz Ali Khan, Maria D Balkey

Proc Natl Acad Sci U S A· November 2020

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Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises.
Ruth E Timme, Patricia C Lafon, Maria Balkey, Jennifer K Adams, Darlene Wagner

Sci Data· November 2020

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Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens.
Ruth E Timme, William J Wolfgang, Maria Balkey, Sai Laxmi Gubbala Venkata, Robyn Randolph

One Health Outlook· October 2020

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Draft Genome Sequences of 81 Salmonella enterica Strains from Informal Markets in Cambodia.
Carla L Schwan, Valentina Trinetta, Maria Balkey, Peter W Cook, Randall K Phebus

Microbiol Resour Announc· September 2020

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Draft Whole-Genome Sequences of 51 Campylobacter jejuni and 12 Campylobacter coli Clinical Isolates from Chile.
Verónica Bravo, Carmen Varela, Lorena Porte, Thomas Weitzel, George J Kastanis, Maria Balkey

Microbiol Resour Announc· April 2020

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Closed Genome Sequences of 28 Foodborne Pathogens from the CFSAN Verification Set, Determined by a Combination of Long and Short Reads.
Narjol Gonzalez-Escalona, George John Kastanis, Ruth Timme, Dwayne Roberson, Maria Balkey

Microbiol Resour Announc· April 2020

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Draft Genome Sequences of 30 Salmonella enterica Serovar Enteritidis Isolates Associated with Multiple Outbreaks in Brazil.
Guojie Cao, Maria Balkey, Qing Jin, Eric Brown, Marc Allard

Microbiol Resour Announc· March 2020

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Draft Genome Sequences of 26 Isolates Associated with Multiple Outbreaks in Brazil.
Guojie Cao, Maria Balkey, Qing Jin, Eric Brown, Marc Allard

Microbiol Resour Announc· March 2020

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Five Closed Genome Sequences from a 2017-2018 Multistrain, Multistate Kratom Outbreak.
Hallie E Rauch, Julie Haendiges, Maria Balkey, Maria Hoffmann

Microbiol Resour Announc· January 2020

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