Publications by authors named "Maria C Nagan"

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Recent Developments in Amber Biomolecular Simulations.
David A Case, David S Cerutti, Vinícius Wilian D Cruzeiro, Thomas A Darden, Robert E Duke, Maria C Nagan

J Chem Inf Model· August 2025

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Accurately Modeling RNA Stem-Loops in an Implicit Solvent Environment.
Jason T Linzer, Ethan Aminov, Aalim S Abdullah, Colleen E Kirkup, Rebeca I Diaz Ventura, Maria C Nagan

J Chem Inf Model· August 2024

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Adjusting the Energy Profile for CH-O Interactions Leads to Improved Stability of RNA Stem-Loop Structures in MD Simulations.
Lauren E Raguette, Sarah S Gunasekera, Rebeca I Diaz Ventura, Ethan Aminov, Jason T Linzer, Maria C Nagan

J Phys Chem B· August 2024

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AmberTools.
David A Case, Hasan Metin Aktulga, Kellon Belfon, David S Cerutti, G Andrés Cisneros, Maria C Nagan

J Chem Inf Model· October 2023

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The Impacts of the Molecular Education and Research Consortium in Undergraduate Computational Chemistry on the Careers of Women in Computational Chemistry.
Kelly Anderson, Sarah Arradondo, K Aurelia Ball, Chrystal Bruce, Maria A Gomez, Maria C Nagan

J Chem Inf Model· December 2022

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Phosphomimetic Mutation at Ser165 of α-Tubulin Promotes the Persistence of GTP Caps in Microtubules.
Vinay Maddula, Nathalia S Holtzman, Maria C Nagan, Susan A Rotenberg

Biochemistry· July 2022

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Women Make COMP: Mentoring the Next Generation of Women in Computational Chemistry.
Giulia Palermo, Kira A Armacost, Maria C Nagan

J Chem Inf Model· October 2019

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Backbone-base interactions critical to quantum stabilization of transfer RNA anticodon structure.
Rachel N Witts, Emily C Hopson, Drew E Koballa, Thomas A Van Boening, Nicholas H Hopkins, Maria C Nagan

J Phys Chem B· June 2013

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Water, shape recognition, salt bridges, and cation-pi interactions differentiate peptide recognition of the HIV rev-responsive element.
Lauren A Michael, Jessica A Chenault, Billy R Miller, Ann M Knolhoff, Maria C Nagan

J Mol Biol· September 2009

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Molecular dynamics simulations of human tRNA Lys,3 UUU: the role of modified bases in mRNA recognition.
Nina E McCrate, Mychel E Varner, Kenneth I Kim, Maria C Nagan

Nucleic Acids Res· December 2006

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Pre-transfer editing by class II prolyl-tRNA synthetase: role of aminoacylation active site in "selective release" of noncognate amino acids.
Sanchita Hati, Brigitte Ziervogel, Julius Sternjohn, Fai-Chu Wong, Maria C Nagan

J Biol Chem· September 2006

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Efficient aminoacylation of the tRNA(Ala) acceptor stem: dependence on the 2:71 base pair.
Penny J Beuning, Maria C Nagan, Christopher J Cramer, Karin Musier-Forsyth, Josep-Lluis Gelpí

RNA· May 2002

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