Publications by authors named "Maria D Logacheva"

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Conflicting Phylogenetic Signals between the Nuclear Ribosomal and Plastome DNA as Evidence for Hybrid Origin of the Tetraploid Member of (Amaranthaceae s.l.).
Tahir H Samigullin, Maria D Logacheva, Galina V Degtjareva, Dmitry D Sokoloff, Svetlana S Beer

Biochemistry (Mosc)· November 2025

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Seed shattering in common buckwheat (Fagopyrum esculentum): insights from RNA-seq and morphological analysis.
Elizaveta M Gunko, Mikhail I Schelkunov, Sofia R Prokopchuk, Anna V Klepikova, Denis O Omelchenko, Maria D Logacheva

BMC Plant Biol· October 2025

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Furanocoumarins in two European species of Heracleum: transcriptomic and metabolomic study.
Victoria Yu Shtratnikova, Viktor P Bogdanov, Mikhail I Schelkunov, Anna V Klepikova, Mariya A Kulbachnaya, Maria D Logacheva

BMC Plant Biol· August 2025

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Inheritance bias of deletion-harbouring mtDNA in yeast: The role of copy number and intracellular selection.
Nataliia D Kashko, Georgii Muravyov, Iuliia Karavaeva, Elena S Glagoleva, Maria D Logacheva

PLoS Genet· June 2025

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Chromosome-Scale Assembly of Capsella orientalis, Maternal Progenitor of Cosmopolitan Allotetraploid C. bursa-pastoris.
Alexandra M Kasianova, Vladislav D Mityukov, Dmitry A German, Artem S Kasianov, Aleksey A Penin, Maria D Logacheva

Genome Biol Evol· January 2025

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Trans2express - de novo transcriptome assembly pipeline optimized for gene expression analysis.
Aleksandra M Kasianova, Aleksey A Penin, Mikhail I Schelkunov, Artem S Kasianov, Maria D Logacheva

Plant Methods· August 2024

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Phylogenetic position and plastid genome structure of , a mycoheterotrophic genus of Orchidaceae (subtribe Orchidinae) endemic to Vietnam.
Tahir H Samigullin, Maria D Logacheva, Leonid V Averyanov, Si-Jin Zeng, Long-Fei Fu

Front Plant Sci· May 2024

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Origin and diversity of Capsella bursa-pastoris from the genomic point of view.
Aleksey A Penin, Artem S Kasianov, Anna V Klepikova, Denis O Omelchenko, Maksim S Makarenko, Maria D Logacheva

BMC Biol· March 2024

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Callus Induction Followed by Regeneration and Hairy Root Induction in Common Buckwheat.
Denis O Omelchenko, Elena S Glagoleva, Anna Y Stepanova, Maria D Logacheva

Methods Mol Biol· March 2024

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The genome of the toxic invasive species Heracleum sosnowskyi carries an increased number of genes despite absence of recent whole-genome duplications.
Mikhail I Schelkunov, Viktoria Yu Shtratnikova, Anna V Klepikova, Maksim S Makarenko, Denis O Omelchenko, Maria D Logacheva

Plant J· January 2024

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Ectopic expression of HIV-1 Tat modifies gene expression in cultured B cells: implications for the development of B-cell lymphomas in HIV-1-infected patients.
Anna A Valyaeva, Maria A Tikhomirova, Daria M Potashnikova, Alexandra N Bogomazova, Galina P Snigiryova, Maria D Logacheva

PeerJ· January 2023

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Interspecific comparison of gene expression profiles using machine learning.
Artem S Kasianov, Anna V Klepikova, Alexey V Mayorov, Gleb S Buzanov, Maria D Logacheva

PLoS Comput Biol· January 2023

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Reproductive development of common buckwheat ( Moench) and its wild relatives provides insights into their evolutionary biology.
Dmitry D Sokoloff, Raisa A Malyshkina, Margarita V Remizowa, Paula J Rudall, Constantin I Fomichev, Maria D Logacheva

Front Plant Sci· January 2023

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Genomic analysis reveals cryptic diversity in aphelids and sheds light on the emergence of Fungi.
Kirill V Mikhailov, Sergey A Karpov, Peter M Letcher, Philip A Lee, Maria D Logacheva

Curr Biol· November 2022

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Full-length isoform constructor (FLIC) - a tool for isoform discovery based on long reads.
Alexandra M Kasianova, Anna V Klepikova, Oleg A Gusev, Guzel R Gazizova, Maria D Logacheva

Bioinformatics· January 2022

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The Mitochondrial Genome of a Freshwater Pelagic Amphipod Is among the Longest in Metazoa.
Elena V Romanova, Yurij S Bukin, Kirill V Mikhailov, Maria D Logacheva, Vladimir V Aleoshin

Genes (Basel)· December 2021

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Transcriptome atlas of .
Anna V Klepikova, Artem S Kasianov, Margarita A Ezhova, Aleksey A Penin, Maria D Logacheva

PeerJ· December 2021

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Genomic comparison of non-photosynthetic plants from the family Balanophoraceae with their photosynthetic relatives.
Mikhail I Schelkunov, Maxim S Nuraliev, Maria D Logacheva

PeerJ· August 2021

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Gene Loss, Pseudogenization in Plastomes of Genus (), and Putative Selection for Adaptation to Environmental Conditions.
Victoria A Scobeyeva, Ilya V Artyushin, Anastasiya A Krinitsina, Pavel A Nikitin, Maxim I Antipin, Maria D Logacheva

Front Genet· July 2021

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Comparative Analysis of Plastid Genomes in the Non-photosynthetic Genus Reveals Ongoing Gene Set Reduction.
Sophia V Yudina, Mikhail I Schelkunov, Lars Nauheimer, Darren Crayn, Sahut Chantanaorrapint, Maria D Logacheva

Front Plant Sci· March 2021

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High-Resolution Transcriptome Atlas and Improved Genome Assembly of Common Buckwheat, .
Aleksey A Penin, Artem S Kasianov, Anna V Klepikova, Ilya V Kirov, Evgeny S Gerasimov, Maria D Logacheva

Front Plant Sci· March 2021

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Genomic signatures of recombination in a natural population of the bdelloid rotifer Adineta vaga.
Olga A Vakhrusheva, Elena A Mnatsakanova, Yan R Galimov, Tatiana V Neretina, Evgeny S Gerasimov, Maria D Logacheva

Nat Commun· December 2020

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Accurate fetal variant calling in the presence of maternal cell contamination.
Elena Nabieva, Satyarth Mishra Sharma, Yermek Kapushev, Sofya K Garushyants, Anna V Fedotova, Maria D Logacheva

Eur J Hum Genet· November 2020

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Complete genome assembly data of sp. RUD330, a hypothetical symbiont of .
Victoria Yu Shtratnikova, Yulia A Rudenskaya, Evgeny S Gerasimov, Mikhail I Schelkunov, Maria D Logacheva

Data Brief· October 2020

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Mitochondrial genome of the nonphotosynthetic mycoheterotrophic plant , its structure, gene expression and RNA editing.
Viktoria Yu Shtratnikova, Mikhail I Schelkunov, Aleksey A Penin, Maria D Logacheva

PeerJ· June 2020

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