Publications by authors named "Marie Zufferey"

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A systematic review of biologically-informed deep learning models for cancer: fundamental trends for encoding and interpreting oncology data.
Magdalena Wysocka, Oskar Wysocki, Marie Zufferey, Dónal Landers, André Freitas

BMC Bioinformatics· May 2023

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Methods for the Analysis of Topologically Associating Domains (TADs).
Marie Zufferey, Daniele Tavernari, Giovanni Ciriello

Methods Mol Biol· January 2022

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Systematic assessment of gene co-regulation within chromatin domains determines differentially active domains across human cancers.
Marie Zufferey, Yuanlong Liu, Daniele Tavernari, Marco Mina, Giovanni Ciriello

Genome Biol· August 2021

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Systematic inference and comparison of multi-scale chromatin sub-compartments connects spatial organization to cell phenotypes.
Yuanlong Liu, Luca Nanni, Stephanie Sungalee, Marie Zufferey, Daniele Tavernari

Nat Commun· May 2021

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EZH2 oncogenic mutations drive epigenetic, transcriptional, and structural changes within chromatin domains.
Maria C Donaldson-Collier, Stephanie Sungalee, Marie Zufferey, Daniele Tavernari, Natalya Katanayeva

Nat Genet· March 2019

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Comparison of computational methods for the identification of topologically associating domains.
Marie Zufferey, Daniele Tavernari, Elisa Oricchio, Giovanni Ciriello

Genome Biol· December 2018

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