Publications by authors named "Mark A Musen"

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Key takeaways from Stanford's symposium on AI for Data Science.
Manisha Desai, John Auerbach, Laurence Baker, Jade Benjamin-Chung, Melissa Bondy, Mark A Musen

J Clin Transl Sci· December 2025

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Desiderata for a biomedical knowledge network: opportunities, challenges and future Directions.
Chunlei Wu, Hongfang Liu, Jason Flannick, Mark A Musen, Andrew I Su

ArXiv· September 2025

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A general strategy for generating expert-guided, simplified views of ontologies.
Anita R Caron, Aleix Puig-Barbe, Ellen M Quardokus, James P Balhoff, Jasmine Belfiore, Mark A Musen

bioRxiv· August 2025

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VO: The Vaccine Ontology.
Jie Zheng, Asiyah Yu Lin, Anthony Huffman, Anna Maria Masci, Rebecca Racz, Mark A Musen

bioRxiv· August 2025

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A Cloud-Based Platform for Harmonized COVID-19 Data: Design and Implementation of the Rapid Acceleration of Diagnostics (RADx) Data Hub.
Marcos Martínez-Romero, Matthew Horridge, Nilesh Mistry, Aubrie Weyhmiller, Jimmy K Yu, Mark A Musen

JMIR Public Health Surveill· August 2025

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BioPortal: an open community resource for sharing, searching, and utilizing biomedical ontologies.
Jennifer Vendetti, Nomi L Harris, Michael V Dorf, Alex Skrenchuk, J Harry Caufield, Mark A Musen

Nucleic Acids Res· July 2025

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Construction, Deployment, and Usage of the Human Reference Atlas Knowledge Graph.
Andreas Bueckle, Bruce W Herr, Josef Hardi, Ellen M Quardokus, Mark A Musen

Sci Data· July 2025

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Structured Knowledge Base Enhances Effective Use of Large Language Models for Metadata Curation.
Sowmya S Sundaram, Benjamin Solomon, Avani Khatri, Anisha Laumas, Purvesh Khatri, Mark A Musen

AMIA Annu Symp Proc· May 2025

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Construction, Deployment, and Usage of the Human Reference Atlas Knowledge Graph for Linked Open Data.
Andreas Bueckle, Bruce W Herr, Josef Hardi, Ellen M Quardokus, Mark A Musen

bioRxiv· February 2025

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Ensuring Adherence to Standards in Experiment-Related Metadata Entered Via Spreadsheets.
Martin J O'Connor, Josef Hardi, Marcos Martínez-Romero, Sowmya Somasundaram, Brendan Honick, Mark A Musen

Sci Data· February 2025

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A change language for ontologies and knowledge graphs.
Harshad Hegde, Jennifer Vendetti, Damien Goutte-Gattat, J Harry Caufield, John B Graybeal, Mark A Musen

Database (Oxford)· January 2025

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Specimen, biological structure, and spatial ontologies in support of a Human Reference Atlas.
Bruce W Herr, Josef Hardi, Ellen M Quardokus, Andreas Bueckle, Lu Chen, Mark A Musen

Sci Data· March 2023

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Modeling community standards for metadata as templates makes data FAIR.
Mark A Musen, Martin J O'Connor, Erik Schultes, Marcos Martínez-Romero, Josef Hardi

Sci Data· November 2022

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Without appropriate metadata, data-sharing mandates are pointless.
Mark A Musen

Nature· September 2022

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Using ethnographic methods to classify the human experience in medicine: a case study of the presence ontology.
Amrapali Maitra, Maulik R Kamdar, Donna M Zulman, Marie C Haverfield, Cati Brown-Johnson, Mark A Musen

J Am Med Inform Assoc· August 2021

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Design of a FAIR digital data health infrastructure in Africa for COVID-19 reporting and research.
Mirjam van Reisen, Francisca Oladipo, Mia Stokmans, Mouhamed Mpezamihgo, Sakinat Folorunso, Mark A Musen

Adv Genet (Hoboken)· June 2021

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An empirical meta-analysis of the life sciences linked open data on the web.
Maulik R Kamdar, Mark A Musen

Sci Data· January 2021

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Obstacles to the reuse of study metadata in ClinicalTrials.gov.
Laura Miron, Rafael S Gonçalves, Mark A Musen

Sci Data· December 2020

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Unleashing the value of Common Data Elements through the CEDAR Workbench.
Martin J O'Connor, Denise B Warzel, Marcos Martínez-Romero, Josef Hardi, Debra Willrett, Mark A Musen

AMIA Annu Symp Proc· August 2020

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Toward a Harmonized WHO Family of International Classifications Content Model.
Samson W Tu, Csongor I Nyulas, Tania Tudorache, Mark A Musen, Andrea Martinuzzi

Stud Health Technol Inform· June 2020

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The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories.
Syed Ahmad Chan Bukhari, Martin J O'Connor, Marcos Martínez-Romero, Attila L Egyedi, Debra Willrett, Mark A Musen

Front Immunol· September 2019

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How Sustainable are Biomedical Ontologies?
James Geller, Vipina K Keloth, Mark A Musen

AMIA Annu Symp Proc· September 2019

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Enabling Web-scale data integration in biomedicine through Linked Open Data.
Maulik R Kamdar, Javier D Fernández, Axel Polleres, Tania Tudorache, Mark A Musen

NPJ Digit Med· September 2019

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The variable quality of metadata about biological samples used in biomedical experiments.
Rafael S Gonçalves, Mark A Musen

Sci Data· February 2019

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Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases.
Marcos Martínez-Romero, Martin J O'Connor, Attila L Egyedi, Debra Willrett, Josef Hardi, Mark A Musen

Database (Oxford)· January 2019

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