Publications by authors named "Mark Abovsky"

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IID 2025: Physical protein interaction data with detection types, co-purified protein sets, molecular docking, and immune cell networks.
Max Kotlyar, Chiara Pastrello, Mark Abovsky, Alexandru Mizeranschi, Armand Keating

Nucleic Acids Res· November 2025

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An OSMR-CLIC1 cross talk drives key oncogenic pathways in glioblastoma.
Amir Hossein Mansourabadi, Dianbo Qu, Francesca Cianci, Jamie Snider, Kamaldeep Randhawa, Mark Abovsky

bioRxiv· October 2025

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Molecular landscape of kidney allograft tissues data integration portal (NephroDIP): a curated database to improve integration of high-throughput kidney transplant datasets.
Alex Boshart, Stefan Petrovic, Mark Abovsky, Chiara Pastrello, Sofia Farkona

Front Immunol· October 2024

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Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing.
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Bader

Nucleic Acids Res· July 2024

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PathDIP 5: improving coverage and making enrichment analysis more biologically meaningful.
Chiara Pastrello, Max Kotlyar, Mark Abovsky, Richard Lu, Igor Jurisica

Nucleic Acids Res· January 2024

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Drugst.One - A plug-and-play solution for online systems medicine and network-based drug repurposing.
Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Bader

ArXiv· July 2023

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MirDIP 5.2: tissue context annotation and novel microRNA curation.
Anne-Christin Hauschild, Chiara Pastrello, Gitta Kirana Anindya Ekaputeri, Dylan Bethune-Waddell, Mark Abovsky

Nucleic Acids Res· January 2023

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Osteoarthritis Data Integration Portal (OsteoDIP): A web-based gene and non-coding RNA expression database.
Chiara Pastrello, Mark Abovsky, Richard Lu, Zuhaib Ahmed, Max Kotlyar

Osteoarthr Cartil Open· March 2022

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miRAnno-network-based functional microRNA annotation.
Tomas Tokar, Chiara Pastrello, Mark Abovsky, Sara Rahmati, Igor Jurisica

Bioinformatics· January 2022

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Estrogen Receptor 1 Inhibition of Wnt/β-Catenin Signaling Contributes to Sex Differences in Hepatocarcinogenesis.
Mamatha Bhat, Elisa Pasini, Chiara Pastrello, Marc Angeli, Cristina Baciu, Mark Abovsky

Front Oncol· November 2021

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pathDIP 4: an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species.
Sara Rahmati, Mark Abovsky, Chiara Pastrello, Max Kotlyar, Richard Lu

Nucleic Acids Res· January 2020

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mirDIP 4.1-integrative database of human microRNA target predictions.
Tomas Tokar, Chiara Pastrello, Andrea E M Rossos, Mark Abovsky, Anne-Christin Hauschild

Nucleic Acids Res· January 2018

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Retraction: Circulating plant miRNAs can regulate human gene expression in vitro.
Chiara Pastrello, Mike Tsay, Rosanne McQuaid, Mark Abovsky, Elisa Pasini

Sci Rep· May 2017

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pathDIP: an annotated resource for known and predicted human gene-pathway associations and pathway enrichment analysis.
Sara Rahmati, Mark Abovsky, Chiara Pastrello, Igor Jurisica

Nucleic Acids Res· January 2017

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Circulating plant miRNAs can regulate human gene expression in vitro.
Chiara Pastrello, Mike Tsay, Rosanne McQuaid, Mark Abovsky, Elisa Pasini

Sci Rep· September 2016

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