Publications by authors named "Mark Alber"

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LIVE-SMART: A sequential, multiple assignment randomized trial to reduce falls in cirrhosis.
Elliot B Tapper, Samantha Nikirk, Donna M Evon, Sumeet Asrani, Patricia Bloom, J Mark Alber

Hepatol Commun· March 2025

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Durotaxis and extracellular matrix degradation promote the clustering of cancer cells.
Mykhailo Potomkin, Oleg Kim, Yuliya Klymenko, Mark Alber, Igor S Aranson

iScience· March 2025

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DEGAST3D: Learning Deformable 3D Graph Similarity to Track Plant Cells in Unregistered Time Lapse Images.
Md Shazid Islam, Arindam Dutta, Calvin-Khang Ta, Kevin Rodriguez, Christian Michael, Mark Alber

IEEE Trans Comput Biol Bioinform· January 2025

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Study of impacts of two types of cellular aging on the yeast bud morphogenesis.
Kevin Tsai, Zhen Zhou, Jiadong Yang, Zhiliang Xu, Shixin Xu, Mark Alber

PLoS Comput Biol· September 2024

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Probabilistic and maximum entropy modeling of chemical reaction systems: Characteristics and comparisons to mass action kinetic models.
William R Cannon, Samuel Britton, Mikahl Banwarth-Kuhn, Mark Alber

J Chem Phys· June 2024

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Balancing competing effects of tissue growth and cytoskeletal regulation during Drosophila wing disc development.
Nilay Kumar, Jennifer Rangel Ambriz, Kevin Tsai, Mayesha Sahir Mim, Marycruz Flores-Flores, Mark Alber

Nat Commun· March 2024

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Study of Impacts of Two Types of Cellular Aging on the Yeast Bud Morphogenesis.
Kevin Tsai, Zhen Zhou, Jiadong Yang, Zhiliang Xu, Shixin Xu, Mark Alber

bioRxiv· February 2024

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Combined computational modeling and experimental study of the biomechanical mechanisms of platelet-driven contraction of fibrin clots.
Christian Michael, Francesco Pancaldi, Samuel Britton, Oleg V Kim, Alina D Peshkova, Mark Alber

Commun Biol· August 2023

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Role of turgor-pressure induced boundary tension in the maintenance of the shoot apical meristem of .
Christian Michael, Mikahl Banwarth-Kuhn, Kevin Rodriguez, Calvin-Khang Ta, Amit Roy-Chowdhury, Mark Alber

J R Soc Interface· June 2023

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A multiscale chemical-mechanical model predicts impact of morphogen spreading on tissue growth.
Alireza Ramezani, Samuel Britton, Roya Zandi, Mark Alber, Ali Nematbakhsh

NPJ Syst Biol Appl· May 2023

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Concentration-dependent transcriptional switching through a collective action of cis-elements.
Kevin Rodriguez, Albert Do, Betul Senay-Aras, Mariano Perales, Mark Alber

Sci Adv· August 2022

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Computational Biomechanical Modeling of Fibrin Networks and Platelet-Fiber Network Interactions.
Francesco Pancaldi, Oleg V Kim, John W Weisel, Mark Alber, Zhiliang Xu

Curr Opin Biomed Eng· June 2022

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Combined computational modeling and experimental analysis integrating chemical and mechanical signals suggests possible mechanism of shoot meristem maintenance.
Mikahl Banwarth-Kuhn, Kevin Rodriguez, Christian Michael, Calvin-Khang Ta, Alexander Plong, Mark Alber

PLoS Comput Biol· June 2022

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Quantification of microtubule stutters: dynamic instability behaviors that are strongly associated with catastrophe.
Shant M Mahserejian, Jared P Scripture, Ava J Mauro, Elizabeth J Lawrence, Erin M Jonasson, Mark Alber

Mol Biol Cell· March 2022

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CLAVATA3 mediated simultaneous control of transcriptional and post-translational processes provides robustness to the WUSCHEL gradient.
Alexander Plong, Kevin Rodriguez, Mark Alber, Weitao Chen, G Venugopala Reddy

Nat Commun· November 2021

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Computational modeling of blood component transport related to coronary artery thrombosis in Kawasaki disease.
Noelia Grande Gutiérrez, Mark Alber, Andrew M Kahn, Jane C Burns, Mathew Mathew

PLoS Comput Biol· September 2021

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Multiscale modeling meets machine learning: What can we learn?
Grace C Y Peng, Mark Alber, Adrian Buganza Tepole, William R Cannon, Suvranu De

Arch Comput Methods Eng· May 2021

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Enzyme activities predicted by metabolite concentrations and solvent capacity in the cell.
Samuel Britton, Mark Alber, William R Cannon

J R Soc Interface· October 2020

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Role of combined cell membrane and wall mechanical properties regulated by polarity signals in cell budding.
Kevin Tsai, Samuel Britton, Ali Nematbakhsh, Roya Zandi, Weitao Chen, Mark Alber

Phys Biol· October 2020

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Epithelial organ shape is generated by patterned actomyosin contractility and maintained by the extracellular matrix.
Ali Nematbakhsh, Megan Levis, Nilay Kumar, Weitao Chen, Jeremiah J Zartman, Mark Alber

PLoS Comput Biol· August 2020

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Behaviors of individual microtubules and microtubule populations relative to critical concentrations: dynamic instability occurs when critical concentrations are driven apart by nucleotide hydrolysis.
Erin M Jonasson, Ava J Mauro, Chunlei Li, Ellen C Labuz, Shant M Mahserejian, Mark Alber

Mol Biol Cell· March 2020

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Integrating machine learning and multiscale modeling-perspectives, challenges, and opportunities in the biological, biomedical, and behavioral sciences.
Mark Alber, Adrian Buganza Tepole, William R Cannon, Suvranu De, Salvador Dura-Bernal

NPJ Digit Med· November 2019

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Fatal dysfunction and disintegration of thrombin-stimulated platelets.
Oleg V Kim, Tatiana A Nevzorova, Elmira R Mordakhanova, Anastasia A Ponomareva, Izabella A Andrianova, Mark S Alber

Haematologica· September 2019

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Contribution of nascent cohesive fiber-fiber interactions to the non-linear elasticity of fibrin networks under tensile load.
Samuel Britton, Oleg Kim, Francesco Pancaldi, Zhiliang Xu, Rustem I Litvinov, Mark Alber

Acta Biomater· August 2019

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Introduction.
Mark Alber, Christophe Godin, Philip K Maini, Roeland Merks, Eric Mjolsness

Bull Math Biol· August 2019

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