Publications by authors named "Mark J Chaisson"

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Genotyping sequence-resolved copy number variation using pangenomes reveals paralog-specific global diversity and expression divergence of duplicated genes.
Walfred Ma, Mark Jp Chaisson

bioRxiv· April 2025

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Identification of GGC Repeat Expansions in Among Chilean Movement Disorder Patients.
Paula Saffie-Awad, Abraham Moller, Kensuke Daida, Pilar Alvarez Jerez, Zhongbo Chen, Mark Jp Chaisson

medRxiv· March 2025

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Structural variation across 138,134 samples in the TOPMed consortium.
Goo Jun, Adam C English, Ginger A Metcalf, Jianzhi Yang, Mark Jp Chaisson

Res Sq· February 2023

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Structural variation across 138,134 samples in the TOPMed consortium.
Goo Jun, Adam C English, Ginger A Metcalf, Jianzhi Yang, Mark Jp Chaisson

bioRxiv· January 2023

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Deleterious mitochondrial DNA point mutations are overrepresented in Drosophila expressing a proofreading-defective DNA polymerase γ.
Colby L Samstag, Jake G Hoekstra, Chiu-Hui Huang, Mark J Chaisson, Richard J Youle

PLoS Genet· November 2018

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Resolving multicopy duplications using polyploid phasing.
Mark J Chaisson, Sudipto Mukherjee, Sreeram Kannan, Evan E Eichler

Res Comput Mol Biol· May 2017

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Long-read sequence assembly of the gorilla genome.
David Gordon, John Huddleston, Mark J P Chaisson, Christopher M Hill, Zev N Kronenberg

Science· April 2016

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Genetic variation and the de novo assembly of human genomes.
Mark J P Chaisson, Richard K Wilson, Evan E Eichler

Nat Rev Genet· November 2015

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Resolving the complexity of the human genome using single-molecule sequencing.
Mark J P Chaisson, John Huddleston, Megan Y Dennis, Peter H Sudmant, Maika Malig

Nature· January 2015

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Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory.
Mark J Chaisson, Glenn Tesler

BMC Bioinformatics· September 2012

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De novo fragment assembly with short mate-paired reads: Does the read length matter?
Mark J Chaisson, Dumitru Brinza, Pavel A Pevzner

Genome Res· February 2009

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Short read fragment assembly of bacterial genomes.
Mark J Chaisson, Pavel A Pevzner

Genome Res· February 2008

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