Publications by authors named "Mark Transtrum"

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Explainable machine learning models for classifying reactions within crowd noise during men's collegiate basketball games.
Mitchell C Cutler, Jason Bickmore, Mark K Transtrum, Katrina Pedersen, Shannon Proksch

J Acoust Soc Am· October 2025

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Quantitative and Kinetic Proteomics Reveal ApoE Isoform-dependent Proteostasis Adaptations in Mouse Brain.
Nathan R Zuniga, Noah E Earls, Ariel E A Denos, Jared M Elison, Benjamin S Jones, Mark K Transtrum

PLoS Comput Biol· December 2024

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Toward a dynamic national transportation noise map: Modeling temporal variability of spectral traffic noise emission levels.
Mylan R Cook, Kent L Gee, Mark K Transtrum, Shane V Lympany

J Acoust Soc Am· September 2024

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Quantitative and Kinetic Proteomics Reveal ApoE Isoform-dependent Proteostasis Adaptations in Mouse Brain.
Nathan R Zuniga, Noah E Earls, Ariel E A Denos, Jared M Elison, Benjamin S Jones, Mark K Transtrum

bioRxiv· August 2024

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Information geometry analysis example for absolute and relative transmission loss in a shallow ocean.
Jay C Spendlove, Tracianne B Neilsen, Mark K Transtrum

JASA Express Lett· July 2024

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The training process of many deep networks explores the same low-dimensional manifold.
Jialin Mao, Itay Griniasty, Han Kheng Teoh, Rahul Ramesh, Rubing Yang, Mark K Transtrum

Proc Natl Acad Sci U S A· March 2024

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Data-driven decomposition of crowd noise from indoor sporting events.
Mitchell C Cutler, Mylan R Cook, Mark K Transtrum, Kent L Gee

J Acoust Soc Am· February 2024

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Sloppy model analysis identifies bifurcation parameters without normal form analysis.
Christian N K Anderson, Mark K Transtrum

Phys Rev E· December 2023

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Toward a dynamic national transportation noise map: Modeling temporal variability of traffic volume.
Mylan R Cook, Kent L Gee, Mark K Transtrum, Shane V Lympany

J Acoust Soc Am· November 2023

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Recurrence Quantification Analysis of Crowd Sound Dynamics.
Shannon Proksch, Majerle Reeves, Kent Gee, Mark Transtrum, Chris Kello

Cogn Sci· October 2023

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Feature selection for a continental-scale geospatial model of environmental sound levels.
Katrina Pedersen, Mark K Transtrum, Kent L Gee, Shane V Lympany, Michael M James

J Acoust Soc Am· August 2023

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Information geometry for multiparameter models: new perspectives on the origin of simplicity.
Katherine N Quinn, Michael C Abbott, Mark K Transtrum, Benjamin B Machta, James P Sethna

Rep Prog Phys· December 2022

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Utilizing Nonequilibrium Isotope Enrichments to Dramatically Increase Turnover Measurement Ranges in Single Biopsy Samples from Humans.
Bradley C Naylor, Christian N K Anderson, Marcus Hadfield, David H Parkinson, Austin Ahlstrom, Mark K Transtrum

J Proteome Res· November 2022

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Bayesian, frequentist, and information geometric approaches to parametric uncertainty quantification of classical empirical interatomic potentials.
Yonatan Kurniawan, Cody L Petrie, Kinamo J Williams, Mark K Transtrum, Ellad B Tadmor

J Chem Phys· June 2022

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Validating two geospatial models of continental-scale environmental sound levels.
Katrina Pedersen, Mark K Transtrum, Kent L Gee, Shane V Lympany, Michael M James

JASA Express Lett· December 2021

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Automatic classification and reduction of wind noise in spectral data.
Mylan R Cook, Kent L Gee, Mark K Transtrum, Shane V Lympany, Matt Calton

JASA Express Lett· June 2021

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Unwinding the model manifold: Choosing similarity measures to remove local minima in sloppy dynamical systems.
Benjamin L Francis, Mark K Transtrum

Phys Rev E· July 2019

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The Spectrum of Mechanism-Oriented Models and Methods for Explanations of Biological Phenomena.
C Anthony Hunt, Ahmet Erdemir, William W Lytton, Feilim Mac Gabhann, Edward A Sander, Mark K Transtrum

Processes (Basel)· May 2018

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Calorimetric Methods for Measuring Stability and Reusability of Membrane Immobilized Enzymes.
Marco Mason, Matteo Scampicchio, Colette F Quinn, Mark K Transtrum, Nicholas Baker

J Food Sci· February 2018

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Maximizing the information learned from finite data selects a simple model.
Henry H Mattingly, Mark K Transtrum, Michael C Abbott, Benjamin B Machta

Proc Natl Acad Sci U S A· February 2018

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Mechanisms of In Vivo Ribosome Maintenance Change in Response to Nutrient Signals.
Andrew D Mathis, Bradley C Naylor, Richard H Carson, Eric Evans, Justin Harwell, Mark K Transtrum

Mol Cell Proteomics· February 2017

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The Limitations of Model-Based Experimental Design and Parameter Estimation in Sloppy Systems.
Andrew White, Malachi Tolman, Howard D Thames, Hubert Rodney Withers, Kathy A Mason, Mark K Transtrum

PLoS Comput Biol· December 2016

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Enzyme-catalyzed and binding reaction kinetics determined by titration calorimetry.
Lee D Hansen, Mark K Transtrum, Colette Quinn, Neil Demarse

Biochim Biophys Acta· May 2016

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Bridging Mechanistic and Phenomenological Models of Complex Biological Systems.
Mark K Transtrum, Peng Qiu

PLoS Comput Biol· May 2016

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Perspective: Sloppiness and emergent theories in physics, biology, and beyond.
Mark K Transtrum, Benjamin B Machta, Kevin S Brown, Bryan C Daniels, Christopher R Myers

J Chem Phys· July 2015

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