Publications by authors named "Mark Wadsworth"

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A bioinformatic survey of RNA isoform diversity and expression across 9 GTEx tissues using long-read sequencing data.
Madeline L Page, Bernardo Aguzzoli Heberle, J Anthony Brandon, Mark E Wadsworth, Lacey A Gordon

BMC Genomics· December 2025

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Genome annotations matter: characterizing Ensembl hg38 annotations from 2014 to 2023.
Madeline L Page, Mark E Wadsworth, Bernardo Aguzzoli Heberle, David W Fardo, Mark T W Ebbert

BMC Genomics· December 2025

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Sequencing the gaps: dark genomic regions persist in CHM13 despite long-read advances.
Mark E Wadsworth, Madeline L Page, Bernardo Aguzzoli Heberle, Justin B Miller, Cody Steely

bioRxiv· May 2025

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Mapping medically relevant RNA isoform diversity in the aged human frontal cortex with deep long-read RNA-seq.
Bernardo Aguzzoli Heberle, J Anthony Brandon, Madeline L Page, Kayla A Nations, Ketsile I Dikobe, Mark E Wadsworth

Nat Biotechnol· April 2025

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Surveying the landscape of RNA isoform diversity and expression across 9 GTEx tissues using long-read sequencing data.
Madeline L Page, Bernardo Aguzzoli Heberle, J Anthony Brandon, Mark E Wadsworth, Lacey A Gordon

bioRxiv· June 2024

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Using deep long-read RNAseq in Alzheimer's disease brain to assess medical relevance of RNA isoform diversity.
Bernardo Aguzzoli Heberle, J Anthony Brandon, Madeline L Page, Kayla A Nations, Ketsile I Dikobe, Mark E Wadsworth

bioRxiv· December 2023

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Tet2 coordinates with Foxo1 and Runx1 to balance T follicular helper cell and T helper 1 cell differentiation.
Andrew Baessler, Camille L Novis, Zuolian Shen, Jelena Perovanovic, Mark Wadsworth

Sci Adv· June 2022

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A human breast cancer-derived xenograft and organoid platform for drug discovery and precision oncology.
Katrin P Guillen, Maihi Fujita, Andrew J Butterfield, Sandra D Scherer, Matthew H Bailey, Mark E Wadsworth

Nat Cancer· February 2022

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Assembly of 809 whole mitochondrial genomes with clinical, imaging, and fluid biomarker phenotyping.
Perry G Ridge, Mark E Wadsworth, Justin B Miller, Andrew J Saykin, Robert C Green

Alzheimers Dement· April 2018

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Evaluating the necessity of PCR duplicate removal from next-generation sequencing data and a comparison of approaches.
Mark T W Ebbert, Mark E Wadsworth, Lyndsay A Staley, Kaitlyn L Hoyt, Brandon Pickett

BMC Bioinformatics· July 2016

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Interaction between variants in CLU and MS4A4E modulates Alzheimer's disease risk.
Mark T W Ebbert, Kevin L Boehme, Mark E Wadsworth, Lyndsay A Staley,

Alzheimers Dement· February 2016

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Variant Tool Chest: an improved tool to analyze and manipulate variant call format (VCF) files.
Mark T W Ebbert, Mark E Wadsworth, Kevin L Boehme, Kaitlyn L Hoyt, Aaron R Sharp

BMC Bioinformatics· October 2014

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Genome-wide association study of CSF levels of 59 alzheimer's disease candidate proteins: significant associations with proteins involved in amyloid processing and inflammation.
John S K Kauwe, Matthew H Bailey, Perry G Ridge, Rachel Perry, Mark E Wadsworth

PLoS Genet· October 2014

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