Publications by authors named "Markus Rampp"

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Scaling of the GROMACS Molecular Dynamics Code to 65k CPU Cores on an HPC Cluster.
Carsten Kutzner, Vedran Miletić, Karen Palacio Rodríguez, Markus Rampp, Gerhard Hummer

J Comput Chem· February 2025

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Machine Learning-Enabled Tomographic Imaging of Chemical Short-Range Atomic Ordering.
Yue Li, Timoteo Colnaghi, Yilun Gong, Huaide Zhang, Yuan Yu, Markus Rampp

Adv Mater· November 2024

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Efficient all-electron hybrid density functionals for atomistic simulations beyond 10 000 atoms.
Sebastian Kokott, Florian Merz, Yi Yao, Christian Carbogno, Mariana Rossi, Markus Rampp

J Chem Phys· July 2024

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Quantitative three-dimensional imaging of chemical short-range order via machine learning enhanced atom probe tomography.
Yue Li, Ye Wei, Zhangwei Wang, Xiaochun Liu, Timoteo Colnaghi, Markus Rampp

Nat Commun· November 2023

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Pre-Exascale Computing of Protein-Ligand Binding Free Energies with Open Source Software for Drug Design.
Vytautas Gapsys, David F Hahn, Gary Tresadern, David L Mobley, Markus Rampp

J Chem Inf Model· March 2022

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NECI: N-Electron Configuration Interaction with an emphasis on state-of-the-art stochastic methods.
Kai Guther, Robert J Anderson, Nick S Blunt, Nikolay A Bogdanov, Deidre Cleland, Markus Rampp

J Chem Phys· July 2020

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Validation tests for cryo-EM maps using an independent particle set.
Sebastian Ortiz, Luka Stanisic, Boris A Rodriguez, Markus Rampp, Gerhard Hummer

J Struct Biol X· July 2020

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Octopus, a computational framework for exploring light-driven phenomena and quantum dynamics in extended and finite systems.
Nicolas Tancogne-Dejean, Micael J T Oliveira, Xavier Andrade, Heiko Appel, Carlos H Borca, Markus Rampp

J Chem Phys· March 2020

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Chloride and organic osmolytes: a hybrid strategy to cope with elevated salinities by the moderately halophilic, chloride-dependent bacterium Halobacillus halophilus.
Stephan H Saum, Friedhelm Pfeiffer, Peter Palm, Markus Rampp, Stephan C Schuster

Environ Microbiol· May 2013

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Dnmt2-dependent methylomes lack defined DNA methylation patterns.
Günter Raddatz, Paloma M Guzzardo, Nelly Olova, Marcelo Rosado Fantappié, Markus Rampp

Proc Natl Acad Sci U S A· May 2013

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Genome of the haloarchaeon Natronomonas moolapensis, a neutrophilic member of a previously haloalkaliphilic genus.
Mike L Dyall-Smith, Friedhelm Pfeiffer, Tanja Oberwinkler, Kathrin Klee, Markus Rampp

Genome Announc· March 2013

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The complete genome sequence of Thermoproteus tenax: a physiologically versatile member of the Crenarchaeota.
Bettina Siebers, Melanie Zaparty, Guenter Raddatz, Britta Tjaden, Sonja-Verena Albers, Markus Rampp

PLoS One· February 2012

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Haloquadratum walsbyi: limited diversity in a global pond.
Mike L Dyall-Smith, Friedhelm Pfeiffer, Kathrin Klee, Peter Palm, Karin Gross, Markus Rampp

PLoS One· October 2011

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A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas elongata DSM 2581 T.
Karin Schwibbert, Alberto Marin-Sanguino, Irina Bagyan, Gabriele Heidrich, Georg Lentzen, Markus Rampp

Environ Microbiol· August 2011

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Genome information management and integrated data analysis with HaloLex.
Friedhelm Pfeiffer, Alexander Broicher, Thomas Gillich, Kathrin Klee, José Mejía, Markus Rampp

Arch Microbiol· September 2008

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The genome of the square archaeon Haloquadratum walsbyi : life at the limits of water activity.
Henk Bolhuis, Peter Palm, Andy Wende, Michaela Falb, Markus Rampp

BMC Genomics· July 2006

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The MIGenAS integrated bioinformatics toolkit for web-based sequence analysis.
Markus Rampp, Thomas Soddemann, Hermann Lederer

Nucleic Acids Res· July 2006

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Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA.
Hendrik N Poinar, Carsten Schwarz, Ji Qi, Beth Shapiro, Ross D E Macphee, Markus Rampp

Science· January 2006

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