Publications by authors named "Martin Frith"

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Further varieties of ancient endogenous retrovirus in human DNA.
Martin C Frith

Mob DNA· March 2025

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The Statistics of Parametrized Syncmers in a Simple Mutation Process Without Spurious Matches.
John L Spouge, Pijush Das, Ye Chen, Martin Frith

J Comput Biol· December 2024

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Targeted nanopore sequencing using the Flongle device to identify mitochondrial DNA variants.
Shintaro Akamatsu, Satomi Mitsuhashi, Kaima Soga, Heisuke Mizukami, Makoto Shiraishi, Martin C Frith

Sci Rep· October 2024

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A simple method for finding related sequences by adding probabilities of alternative alignments.
Martin C Frith

Genome Res· September 2024

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Evolution and subfamilies of HERVL human endogenous retrovirus.
Huan Zhang, Martin C Frith

Bioinform Adv· July 2024

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Cost-Effective Cas9-Mediated Targeted Sequencing of Spinocerebellar Ataxia Repeat Expansions.
Keiji Tachikawa, Takahiro Shimizu, Takeshi Imai, Riyoko Ko, Yosuke Kawai, Martin C Frith

J Mol Diagn· February 2024

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DNA Conserved in Diverse Animals Since the Precambrian Controls Genes for Embryonic Development.
Martin C Frith, Shengliang Ni

Mol Biol Evol· December 2023

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Biallelic structural variations within detected by long-read sequencing in epilepsy.
Sachiko Ohori, Akihiko Miyauchi, Hitoshi Osaka, Charles Marques Lourenco, Naohiro Arakaki, Martin C Frith

Life Sci Alliance· August 2023

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Improved DNA-Versus-Protein Homology Search for Protein Fossils.
Yin Yao, Martin C Frith

IEEE/ACM Trans Comput Biol Bioinform· June 2023

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A new layer of complexity in the human genome: Somatic recombination of repeat elements.
Giovanni Pascarella, Martin Frith, Piero Carninci

Clin Transl Med· March 2023

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How to optimally sample a sequence for rapid analysis.
Martin C Frith, Jim Shaw, John L Spouge

Bioinformatics· February 2023

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Analysis of Tandem Repeat Expansions Using Long DNA Reads.
Satomi Mitsuhashi, Martin C Frith

Methods Mol Biol· February 2023

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Finding Rearrangements in Nanopore DNA Reads with LAST and dnarrange.
Martin C Frith, Satomi Mitsuhashi

Methods Mol Biol· February 2023

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An immune-suppressing protein in human endogenous retroviruses.
Huan Zhang, Shengliang Ni, Martin C Frith

Bioinform Adv· February 2023

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Recombination of repeat elements generates somatic complexity in human genomes.
Giovanni Pascarella, Chung Chau Hon, Kosuke Hashimoto, Annika Busch, Joachim Luginbühl, Martin Frith

Cell· August 2022

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Paleozoic Protein Fossils Illuminate the Evolution of Vertebrate Genomes and Transposable Elements.
Martin C Frith

Mol Biol Evol· April 2022

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Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.
Mathys Grapotte, Manu Saraswat, Chloé Bessière, Christophe Menichelli, Jordan A Ramilowski, Martin C Frith

Nat Commun· March 2022

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Long-read whole-genome sequencing identified a partial MBD5 deletion in an exome-negative patient with neurodevelopmental disorder.
Sachiko Ohori, Rie S Tsuburaya, Masako Kinoshita, Etsuko Miyagi, Takeshi Mizuguchi, Martin C Frith

J Hum Genet· July 2021

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Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.
Mathys Grapotte, Manu Saraswat, Chloé Bessière, Christophe Menichelli, Jordan A Ramilowski, Martin C Frith

Nat Commun· June 2021

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Nanopore direct RNA sequencing detects DUX4-activated repeats and isoforms in human muscle cells.
Satomi Mitsuhashi, So Nakagawa, Mitsuru Sasaki-Honda, Hidetoshi Sakurai, Martin C Frith

Hum Mol Genet· May 2021

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lamassemble: Multiple Alignment and Consensus Sequence of Long Reads.
Martin C Frith, Satomi Mitsuhashi, Kazutaka Katoh

Methods Mol Biol· April 2021

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Minimally overlapping words for sequence similarity search.
Martin C Frith, Laurent Noé, Gregory Kucherov

Bioinformatics· April 2021

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Significant non-existence of sequences in genomes and proteomes.
Grigorios Koulouras, Martin C Frith

Nucleic Acids Res· April 2021

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Genome-wide survey of tandem repeats by nanopore sequencing shows that disease-associated repeats are more polymorphic in the general population.
Satomi Mitsuhashi, Martin C Frith, Naomichi Matsumoto

BMC Med Genomics· January 2021

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A pipeline for complete characterization of complex germline rearrangements from long DNA reads.
Satomi Mitsuhashi, Sachiko Ohori, Kazutaka Katoh, Martin C Frith, Naomichi Matsumoto

Genome Med· July 2020

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