Publications by authors named "Martin Sergeant"

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Incongruent virtual reality cycling exercise demonstrates a role of perceived effort in cardiovascular control.
Richard M Bruce, Gerrard F Rafferty, Sarah L Finnegan, Martin Sergeant, Kyle T S Pattinson

J Physiol· September 2025

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Temporo-spatial cellular atlas of the regenerating alveolar niche in idiopathic pulmonary fibrosis.
Praveen Weeratunga, Bethany Hunter, Martin Sergeant, Joshua Bull, Colin Clelland

Nat Commun· August 2025

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Single cell spatial analysis reveals inflammatory foci of immature neutrophil and CD8 T cells in COVID-19 lungs.
Praveen Weeratunga, Laura Denney, Joshua A Bull, Emmanouela Repapi, Martin Sergeant

Nat Commun· November 2023

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Breathlessness in a virtual world: An experimental paradigm testing how discrepancy between VR visual gradients and pedal resistance during stationary cycling affects breathlessness perception.
Sarah L Finnegan, David J Dearlove, Peter Morris, Daniel Freeman, Martin Sergeant

PLoS One· April 2023

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LanceOtron: a deep learning peak caller for genome sequencing experiments.
Lance D Hentges, Martin J Sergeant, Christopher B Cole, Damien J Downes, Jim R Hughes

Bioinformatics· September 2022

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Multi Locus View: an extensible web-based tool for the analysis of genomic data.
Martin J Sergeant, Jim R Hughes, Lance Hentges, Gerton Lunter, Damien J Downes

Commun Biol· May 2021

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High-resolution targeted 3C interrogation of cis-regulatory element organization at genome-wide scale.
Damien J Downes, Robert A Beagrie, Matthew E Gosden, Jelena Telenius, Stephanie J Carpenter, Martin Sergeant

Nat Commun· January 2021

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Genomic approaches used to investigate an atypical outbreak of Salmonella Adjame.
Marie Anne Chattaway, Nastassya Chandra, Anaïs Painset, Victoria Shah, Peter Lamb, Martin Sergeant

Microb Genom· January 2019

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GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens.
Zhemin Zhou, Nabil-Fareed Alikhan, Martin J Sergeant, Nina Luhmann, Cátia Vaz

Genome Res· September 2018

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Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia.
Zhemin Zhou, Inge Lundstrøm, Alicia Tran-Dien, Sebastián Duchêne, Nabil-Fareed Alikhan, Martin J Sergeant

Curr Biol· August 2018

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A genomic overview of the population structure of Salmonella.
Nabil-Fareed Alikhan, Zhemin Zhou, Martin J Sergeant, Mark Achtman

PLoS Genet· April 2018

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Impact of human-associated Escherichia coli clonal groups in Antarctic pinnipeds: presence of ST73, ST95, ST141 and ST131.
Azucena Mora, Francisco Javier García-Peña, María Pilar Alonso, Susana Pedraza-Diaz, Luis Miguel Ortega-Mora, Martin J Sergeant

Sci Rep· March 2018

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Promotion of Germination Using Hydroxamic Acid Inhibitors of 9--Epoxycarotenoid Dioxygenase.
Sajjad Z Awan, Jake O Chandler, Peter J Harrison, Martin J Sergeant, Timothy D H Bugg

Front Plant Sci· March 2017

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The gut-adherent microbiota of PSC-IBD is distinct to that of IBD.
Mohammed Nabil Quraishi, Martin Sergeant, Gemma Kay, Tariq Iqbal, Jacqueline Chan

Gut· February 2017

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Draft Genome Sequences of Six Novel Bacterial Isolates from Chicken Ceca.
Nicholas A Duggett, Gemma L Kay, Martin J Sergeant, Michael Bedford, Chrystala I Constantinidou

Genome Announc· May 2016

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Differences in the Faecal Microbiome in Schistosoma haematobium Infected Children vs. Uninfected Children.
Gemma Louise Kay, Andrew Millard, Martin J Sergeant, Nicholas Midzi, Reggis Gwisai

PLoS Negl Trop Dis· March 2016

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Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe.
Gemma L Kay, Martin J Sergeant, Zhemin Zhou, Jacqueline Z-M Chan, Andrew Millard

Nat Commun· April 2015

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Resequencing at ≥40-Fold Depth of the Parental Genomes of a Solanum lycopersicum × S. pimpinellifolium Recombinant Inbred Line Population and Characterization of Frame-Shift InDels That Are Highly Likely to Perturb Protein Function.
Zoltan Kevei, Robert C King, Fady Mohareb, Martin J Sergeant, Sajjad Z Awan

G3 (Bethesda)· March 2015

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Extensive microbial and functional diversity within the chicken cecal microbiome.
Martin J Sergeant, Chrystala Constantinidou, Tristan A Cogan, Michael R Bedford, Charles W Penn

PLoS One· January 2015

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Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer.
Emma L Doughty, Martin J Sergeant, Ifedayo Adetifa, Martin Antonio, Mark J Pallen

PeerJ· October 2014

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Recovery of a medieval Brucella melitensis genome using shotgun metagenomics.
Gemma L Kay, Martin J Sergeant, Valentina Giuffra, Pasquale Bandiera, Marco Milanese

mBio· July 2014

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Metagenomic analysis of tuberculosis in a mummy.
Jacqueline Z-M Chan, Martin J Sergeant, Oona Y-C Lee, David E Minnikin, Gurdyal S Besra

N Engl J Med· July 2013

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Transcriptomic analysis of the interactions between Agaricus bisporus and Lecanicillium fungicola.
Andy M Bailey, Patrick D Collopy, D John Thomas, Martin R Sergeant, Ana M S B Costa

Fungal Genet Biol· June 2013

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High-throughput sequencing of 16S rRNA gene amplicons: effects of extraction procedure, primer length and annealing temperature.
Martin J Sergeant, Chrystala Constantinidou, Tristan Cogan, Charles W Penn, Mark J Pallen

PLoS One· October 2012

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High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity.
Nicholas J Loman, Chrystala Constantinidou, Jacqueline Z M Chan, Mihail Halachev, Martin Sergeant

Nat Rev Microbiol· September 2012

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