Publications by authors named "Martyn D Winn"

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Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge.
Catherine L Lawson, Andriy Kryshtafovych, Grigore D Pintilie, Stephen K Burley, Jiří Černý, Martyn D Winn

Nat Methods· July 2024

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Community recommendations on cryoEM data archiving and validation.
Gerard J Kleywegt, Paul D Adams, Sarah J Butcher, Catherine L Lawson, Alexis Rohou, Martyn D Winn

IUCrJ· March 2024

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Community recommendations on cryoEM data archiving and validation: Outcomes of a wwPDB/EMDB workshop on cryoEM data management, deposition and validation.
Gerard J Kleywegt, Paul D Adams, Sarah J Butcher, Catherine L Lawson, Alexis Rohou, Martyn D Winn

ArXiv· February 2024

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Communities in structural biology.
Martyn David Winn

Nat Struct Mol Biol· January 2024

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Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge.
Catherine L Lawson, Andriy Kryshtafovych, Grigore D Pintilie, Stephen K Burley, Jiří Černý, Martyn D Winn

Res Sq· January 2024

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The CCP4 suite: integrative software for macromolecular crystallography.
Jon Agirre, Mihaela Atanasova, Haroldas Bagdonas, Charles B Ballard, Arnaud Baslé, Martyn D Winn

Acta Crystallogr D Struct Biol· June 2023

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Overview and applications of map and model validation tools in the CCP-EM software suite.
Agnel Praveen Joseph, Sony Malhotra, Tom Burnley, Martyn D Winn

Faraday Discuss· November 2022

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Atomic model validation using the CCP-EM software suite.
Agnel Praveen Joseph, Mateusz Olek, Sony Malhotra, Peijun Zhang, Kevin Cowtan, Martyn D Winn

Acta Crystallogr D Struct Biol· February 2022

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Redeployment of automated MrBUMP search-model identification for map fitting in cryo-EM.
Adam J Simpkin, Martyn D Winn, Daniel J Rigden, Ronan M Keegan

Acta Crystallogr D Struct Biol· November 2021

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Modulation of Antimicrobial Peptide Potency in Stressed Lipid Bilayers.
Valeria Losasso, Ya-Wen Hsiao, Fausto Martelli, Martyn D Winn, Jason Crain

Phys Rev Lett· May 2019

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Streaming histogram sketching for rapid microbiome analytics.
Will Pm Rowe, Anna Paola Carrieri, Cristina Alcon-Giner, Shabhonam Caim, Alex Shaw, Martyn D Winn

Microbiome· March 2019

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Indexed variation graphs for efficient and accurate resistome profiling.
Will P M Rowe, Martyn D Winn

Bioinformatics· November 2018

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Recent developments in MrBUMP: better search-model preparation, graphical interaction with search models, and solution improvement and assessment.
Ronan M Keegan, Stuart J McNicholas, Jens M H Thomas, Adam J Simpkin, Felix Simkovic, Martyn D Winn

Acta Crystallogr D Struct Biol· March 2018

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Ensembles generated from crystal structures of single distant homologues solve challenging molecular-replacement cases in AMPLE.
Daniel J Rigden, Jens M H Thomas, Felix Simkovic, Adam Simpkin, Martyn D Winn

Acta Crystallogr D Struct Biol· March 2018

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K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity.
Chang Sik Kim, Martyn D Winn, Vipin Sachdeva, Kirk E Jordan

BMC Bioinformatics· November 2017

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EGFR oligomerization organizes kinase-active dimers into competent signalling platforms.
Sarah R Needham, Selene K Roberts, Anton Arkhipov, Venkatesh P Mysore, Christopher J Tynan, Martyn D Winn

Nat Commun· October 2016

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Residue contacts predicted by evolutionary covariance extend the application of ab initio molecular replacement to larger and more challenging protein folds.
Felix Simkovic, Jens M H Thomas, Ronan M Keegan, Martyn D Winn, Olga Mayans

IUCrJ· July 2016

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Routine phasing of coiled-coil protein crystal structures with AMPLE.
Jens M H Thomas, Ronan M Keegan, Jaclyn Bibby, Martyn D Winn, Olga Mayans

IUCrJ· March 2015

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Exploring the speed and performance of molecular replacement with AMPLE using QUARK ab initio protein models.
Ronan M Keegan, Jaclyn Bibby, Jens Thomas, Dong Xu, Yang Zhang, Martyn D Winn

Acta Crystallogr D Biol Crystallogr· February 2015

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Conversion of a disulfide bond into a thioacetal group during echinomycin biosynthesis.
Kinya Hotta, Ronan M Keegan, Soumya Ranganathan, Minyi Fang, Jaclyn Bibby, Martyn D Winn

Angew Chem Int Ed Engl· January 2014

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Ligand binding and dynamics of the monomeric epidermal growth factor receptor ectodomain.
Hannes H Loeffler, Martyn D Winn

Proteins· November 2013

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Application of the AMPLE cluster-and-truncate approach to NMR structures for molecular replacement.
Jaclyn Bibby, Ronan M Keegan, Olga Mayans, Martyn D Winn, Daniel J Rigden

Acta Crystallogr D Biol Crystallogr· November 2013

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AMPLE: a cluster-and-truncate approach to solve the crystal structures of small proteins using rapidly computed ab initio models.
Jaclyn Bibby, Ronan M Keegan, Olga Mayans, Martyn D Winn, Daniel J Rigden

Acta Crystallogr D Biol Crystallogr· December 2012

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Evaluating the solution from MrBUMP and BALBES.
Ronan M Keegan, Fei Long, Vincent J Fazio, Martyn D Winn, Garib N Murshudov

Acta Crystallogr D Biol Crystallogr· April 2011

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REFMAC5 for the refinement of macromolecular crystal structures.
Garib N Murshudov, Pavol Skubák, Andrey A Lebedev, Navraj S Pannu, Roberto A Steiner, Martyn D Winn

Acta Crystallogr D Biol Crystallogr· April 2011

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