Publications by authors named "Masatoshi Nei"

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The Reproducibility of an Inferred Tree and the Diploidization of Gene Segregation after Genome Duplication.
Yukako Katsura, Masatoshi Nei

Genome Biol Evol· February 2020

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The Reliability and Stability of an Inferred Phylogenetic Tree from Empirical Data.
Yukako Katsura, Craig E Stanley, Sudhir Kumar, Masatoshi Nei

Mol Biol Evol· March 2017

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Efficiencies of the NJp, Maximum Likelihood, and Bayesian Methods of Phylogenetic Construction for Compositional and Noncompositional Genes.
Ruriko Yoshida, Masatoshi Nei

Mol Biol Evol· June 2016

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POPTREEW: web version of POPTREE for constructing population trees from allele frequency data and computing some other quantities.
Naoko Takezaki, Masatoshi Nei, Koichiro Tamura

Mol Biol Evol· June 2014

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My memory of Walter Fitch (1929-2011) and starting molecular biology and evolution.
Masatoshi Nei

Mol Biol Evol· June 2014

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Evolution of the sex-lethal gene in insects and origin of the sex-determination system in Drosophila.
Zhenguo Zhang, Jan Klein, Masatoshi Nei

J Mol Evol· January 2014

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Random fluctuation of selection coefficients and the extent of nucleotide variation in human populations.
Sayaka Miura, Zhenguo Zhang, Masatoshi Nei

Proc Natl Acad Sci U S A· June 2013

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Origins and evolution of microRNA genes in plant species.
Masafumi Nozawa, Sayaka Miura, Masatoshi Nei

Genome Biol Evol· July 2012

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Roles of mutation and selection in speciation: from Hugo de Vries to the modern genomic era.
Masatoshi Nei, Masafumi Nozawa

Genome Biol Evol· December 2011

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MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.
Koichiro Tamura, Daniel Peterson, Nicholas Peterson, Glen Stecher, Masatoshi Nei

Mol Biol Evol· October 2011

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Evolutionary changes of the target sites of two microRNAs encoded in the Hox gene cluster of Drosophila and other insect species.
Sayaka Miura, Masafumi Nozawa, Masatoshi Nei

Genome Biol Evol· May 2011

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The neutral theory of molecular evolution in the genomic era.
Masatoshi Nei, Yoshiyuki Suzuki, Masafumi Nozawa

Annu Rev Genomics Hum Genet· September 2010

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Origins and evolution of microRNA genes in Drosophila species.
Masafumi Nozawa, Sayaka Miura, Masatoshi Nei

Genome Biol Evol· July 2010

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Is positive selection responsible for the evolution of a duplicate UV-sensitive opsin gene in Heliconius butterflies?
Masafumi Nozawa, Yoshiyuki Suzuki, Masatoshi Nei

Proc Natl Acad Sci U S A· June 2010

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POPTREE2: Software for constructing population trees from allele frequency data and computing other population statistics with Windows interface.
Naoko Takezaki, Masatoshi Nei, Koichiro Tamura

Mol Biol Evol· April 2010

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Analysis of the immunoglobulin light chain genes in zebra finch: evolutionary implications.
Sabyasachi Das, Uzra Mohamedy, Masayuki Hirano, Masatoshi Nei, Nikolas Nikolaidis

Mol Biol Evol· January 2010

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Genomic organization and evolution of immunoglobulin kappa gene enhancers and kappa deleting element in mammals.
Sabyasachi Das, Nikolas Nikolaidis, Masatoshi Nei

Mol Immunol· September 2009

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Genomic drift and evolution of microsatellite DNAs in human populations.
Naoko Takezaki, Masatoshi Nei

Mol Biol Evol· August 2009

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Reliabilities of identifying positive selection by the branch-site and the site-prediction methods.
Masafumi Nozawa, Yoshiyuki Suzuki, Masatoshi Nei

Proc Natl Acad Sci U S A· April 2009

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Evolution of F-box genes in plants: different modes of sequence divergence and their relationships with functional diversification.
Guixia Xu, Hong Ma, Masatoshi Nei, Hongzhi Kong

Proc Natl Acad Sci U S A· January 2009

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Origins and evolution of the formin multigene family that is involved in the formation of actin filaments.
Dimitra Chalkia, Nikolas Nikolaidis, Wojciech Makalowski, Jan Klein, Masatoshi Nei

Mol Biol Evol· December 2008

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The evolution of animal chemosensory receptor gene repertoires: roles of chance and necessity.
Masatoshi Nei, Yoshihito Niimura, Masafumi Nozawa

Nat Rev Genet· December 2008

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Evolutionary redefinition of immunoglobulin light chain isotypes in tetrapods using molecular markers.
Sabyasachi Das, Nikolas Nikolaidis, Jan Klein, Masatoshi Nei

Proc Natl Acad Sci U S A· October 2008

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Ultraconserved coding regions outside the homeobox of mammalian Hox genes.
Zhenguo Lin, Hong Ma, Masatoshi Nei

BMC Evol Biol· September 2008

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MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences.
Sudhir Kumar, Masatoshi Nei, Joel Dudley, Koichiro Tamura

Brief Bioinform· July 2008

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