Publications by authors named "Matej Lexa"

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Creatine kinase B, a downstream effector of c-Myb, controls migration of osteosarcoma cells via regulation of N-cadherin.
Jana Pokludová, Petr Lapčík, Iva Staniczková Zambo, Jiří Kohoutek, Danica Zapletalová, Matej Lexa

Cancer Cell Int· December 2025

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Detection and classification of long terminal repeat sequences in plant LTR-retrotransposons and their analysis using explainable machine learning.
Jakub Horvath, Pavel Jedlicka, Marie Kratka, Zdenek Kubat, Eduard Kejnovsky, Matej Lexa

BioData Min· December 2024

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Correction: Detection and classification of long terminal repeat sequences in plant LTR-retrotransposons and their analysis using explainable machine learning.
Jakub Horvath, Pavel Jedlicka, Marie Kratka, Zdenek Kubat, Eduard Kejnovsky, Matej Lexa

BioData Min· December 2024

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High-Throughput Spike Detection in Greenhouse Cultivated Grain Crops with Attention Mechanisms-Based Deep Learning Models.
Sajid Ullah, Klára Panzarová, Martin Trtílek, Matej Lexa, Vojtěch Máčala

Plant Phenomics· March 2024

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A perspective on genetic and polygenic risk scores-advances and limitations and overview of associated tools.
Jana Schwarzerova, Martin Hurta, Vojtech Barton, Matej Lexa, Dirk Walther

Brief Bioinform· March 2024

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HiC-TE: a computational pipeline for Hi-C data analysis to study the role of repeat family interactions in the genome 3D organization.
Matej Lexa, Monika Cechova, Son Hoang Nguyen, Pavel Jedlicka, Viktor Tokan

Bioinformatics· August 2022

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Patients With Common Variable Immunodeficiency (CVID) Show Higher Gut Bacterial Diversity and Levels of Low-Abundance Genes Than the Healthy Housemates.
Juraj Bosák, Matej Lexa, Kristýna Fiedorová, Darshak C Gadara, Lenka Micenková

Front Immunol· November 2021

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Letter to the Editor: Significant mutation enrichment in inverted repeat sites of new SARS-CoV-2 strains.
Martin Bartas, Pratik Goswami, Matej Lexa, Jiří Červeň, Adriana Volná

Brief Bioinform· September 2021

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Escherichia coli Strains Producing Selected Bacteriocins Inhibit Porcine Enterotoxigenic Escherichia coli (ETEC) under both and Conditions.
Matěj Hrala, Juraj Bosák, Lenka Micenková, Jitka Křenová, Matej Lexa

Appl Environ Microbiol· June 2021

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SARS-CoV-2 hot-spot mutations are significantly enriched within inverted repeats and CpG island loci.
Pratik Goswami, Martin Bartas, Matej Lexa, Natália Bohálová, Adriana Volná

Brief Bioinform· March 2021

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TE-greedy-nester: structure-based detection of LTR retrotransposons and their nesting.
Matej Lexa, Pavel Jedlicka, Ivan Vanat, Michal Cervenansky, Eduard Kejnovsky

Bioinformatics· December 2020

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Bacterial but Not Fungal Gut Microbiota Alterations Are Associated With Common Variable Immunodeficiency (CVID) Phenotype.
Kristýna Fiedorová, Matěj Radvanský, Juraj Bosák, Hana Grombiříková, Eva Němcová, Matej Lexa

Front Immunol· September 2020

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What Can Long Terminal Repeats Tell Us About the Age of LTR Retrotransposons, Gene Conversion and Ectopic Recombination?
Pavel Jedlicka, Matej Lexa, Eduard Kejnovsky

Front Plant Sci· May 2020

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pqsfinder web: G-quadruplex prediction using optimized pqsfinder algorithm.
Dominika Labudová, Jiří Hon, Matej Lexa

Bioinformatics· April 2020

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Correction to: Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico study.
Pavel Jedlicka, Matej Lexa, Ivan Vanat, Roman Hobza, Eduard Kejnovsky

Mob DNA· January 2020

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Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico study.
Pavel Jedlicka, Matej Lexa, Ivan Vanat, Roman Hobza, Eduard Kejnovsky

Mob DNA· December 2019

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High-throughput analysis revealed mutations' diverging effects on exon 7 splicing.
Přemysl Souček, Kamila Réblová, Michal Kramárek, Lenka Radová, Tereza Grymová, Matej Lexa

RNA Biol· October 2019

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The Impact of DNA Extraction Methods on Stool Bacterial and Fungal Microbiota Community Recovery.
Kristýna Fiedorová, Matěj Radvanský, Eva Němcová, Hana Grombiříková, Juraj Bosák, Matej Lexa

Front Microbiol· April 2019

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Quadruplex DNA in long terminal repeats in maize LTR retrotransposons inhibits the expression of a reporter gene in yeast.
Viktor Tokan, Janka Puterova, Matej Lexa, Eduard Kejnovsky

BMC Genomics· March 2018

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pqsfinder: an exhaustive and imperfection-tolerant search tool for potential quadruplex-forming sequences in R.
Jirí Hon, Tomáš Martínek, Jaroslav Zendulka, Matej Lexa

Bioinformatics· November 2017

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p53 Specifically Binds Triplex DNA In Vitro and in Cells.
Marie Brázdová, Vlastimil Tichý, Robert Helma, Pavla Bažantová, Alena Polášková, Matej Lexa

PLoS One· July 2017

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Effects of Isoflavone-Enriched Feed on the Rumen Microbiota in Dairy Cows.
Jitka Kasparovska, Martina Pecinkova, Katerina Dadakova, Ludmila Krizova, Sylvie Hadrova, Matej Lexa

PLoS One· April 2017

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Hammock: a hidden Markov model-based peptide clustering algorithm to identify protein-interaction consensus motifs in large datasets.
Adam Krejci, Ted R Hupp, Matej Lexa, Borivoj Vojtesek, Petr Muller

Bioinformatics· January 2016

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Transposable elements and G-quadruplexes.
Eduard Kejnovsky, Viktor Tokan, Matej Lexa

Chromosome Res· September 2015

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Guanine quadruplexes are formed by specific regions of human transposable elements.
Matej Lexa, Pavlina Steflova, Tomas Martinek, Michaela Vorlickova, Boris Vyskot

BMC Genomics· November 2014

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