Publications by authors named "Mathew A Beale"

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SPARKI: a tool for the statistical analysis of pathogen identification results.
Jacqueline M Boccacino, Martin Del Castillo Velasco-Herrera, Mathew A Beale, Jamie Billington, Ian Vermes

Bioinformatics· November 2025

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Circulation of Salmonella spp. between humans, animals and the environment in animal-owning households in Malawi.
Catherine N Wilson, Patrick Musicha, Mathew A Beale, Yohane Diness, Oscar Kanjerwa

Nat Commun· November 2025

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Transmission of extended spectrum β-lactamase-producing Escherichia coli and antimicrobial resistance gene flow across One Health compartments in eastern Africa: a whole-genome sequence analysis from a prospective cohort study.
Patrick Musicha, Mathew A Beale, Derek Cocker, Fiona A Oruru, Allan Zuza

Lancet Microbe· November 2025

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Diversity of Salmonella enterica isolates from urban river and sewage water in Blantyre, Malawi.
Jonathan Rigby, Catherine N Wilson, Allan Zuza, Yohane Diness, Charity Mkwanda, Mathew A Beale

PLoS Negl Trop Dis· September 2025

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carriage by geckos detected within households in Malawi.
Catherine N Wilson, Patrick Musicha, Mathew A Beale, Yohane Diness, Oscar Kanjerwa

One Health· December 2024

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Conference report: the first bacterial genome sequencing pan-European network conference.
Zoja Germuskova, Elisa Sosa, Amaya Campillay Lagos, Hege Vangstein Aamot, Mathew A Beale

Microbes Infect· August 2024

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Genus-wide research provides insights into pathogen evolution.
Stephanie McGimpsey, Mathew A Beale

Nat Rev Microbiol· March 2024

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Genomic epidemiology of syphilis in England: a population-based study.
Mathew A Beale, Louise Thorn, Michelle J Cole, Rachel Pitt, Hannah Charles

Lancet Microbe· October 2023

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Genomic epidemiology reveals multidrug resistant plasmid spread between Vibrio cholerae lineages in Yemen.
Florent Lassalle, Salah Al-Shalali, Mukhtar Al-Hakimi, Elisabeth Njamkepo, Ismail Mahat Bashir, Mathew A Beale

Nat Microbiol· October 2023

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A genomic appraisal of invasive Salmonella Typhimurium and associated antibiotic resistance in sub-Saharan Africa.
Sandra Van Puyvelde, Tessa de Block, Sushmita Sridhar, Matt Bawn, Robert A Kingsley, Mathew A Beale

Nat Commun· October 2023

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Genomic analysis of extended-spectrum beta-lactamase (ESBL) producing colonising adults in Blantyre, Malawi reveals previously undescribed diversity.
Joseph M Lewis, Madalitso Mphasa, Rachel Banda, Mathew A Beale, Jane Mallewa

Microb Genom· June 2023

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Evidence of widespread endemic populations of highly multidrug resistant Klebsiella pneumoniae in hospital settings in Hanoi, Vietnam: a prospective cohort study.
My H Pham, Le Thi Hoi, Mathew A Beale, Fahad A Khokhar, Nguyen Thi Hoa

Lancet Microbe· April 2023

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Genomic epidemiology on the move.
Catherine N Wilson, Patrick Musicha, Mathew A Beale

Nat Rev Microbiol· February 2023

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Colonization dynamics of extended-spectrum beta-lactamase-producing Enterobacterales in the gut of Malawian adults.
Joseph M Lewis, Madalitso Mphasa, Rachel Banda, Mathew A Beale, Eva Heinz

Nat Microbiol· October 2022

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Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak in Australia: a genomic epidemiological analysis.
Mona L Taouk, George Taiaroa, Shivani Pasricha, Sophie Herman, Eric P F Chow, Mathew A Beale

Lancet Microbe· June 2022

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Genomic and antigenic diversity of colonizing isolates mirrors that of invasive isolates in Blantyre, Malawi.
Joseph M Lewis, Madalitso Mphasa, Rachel Banda, Mathew A Beale, Jane Mallewa

Microb Genom· March 2022

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SARS-CoV-2 genomics as a springboard for future disease mitigation in LMICs.
Sophie Belman, Senjuti Saha, Mathew A Beale

Nat Rev Microbiol· January 2022

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Trial of Three Rounds of Mass Azithromycin Administration for Yaws Eradication.
Lucy N John, Camila G Beiras, Wendy Houinei, Monica Medappa, Maria Sabok, Mathew A Beale

N Engl J Med· January 2022

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Global phylogeny of Treponema pallidum lineages reveals recent expansion and spread of contemporary syphilis.
Mathew A Beale, Michael Marks, Michelle J Cole, Min-Kuang Lee, Rachel Pitt

Nat Microbiol· December 2021

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Epidemiologic and Genomic Reidentification of Yaws, Liberia.
Joseph W S Timothy, Mathew A Beale, Emerson Rogers, Zeela Zaizay, Katherine E Halliday

Emerg Infect Dis· April 2021

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Genomic epidemiology of COVID-19 in care homes in the east of England.
William L Hamilton, Gerry Tonkin-Hill, Emily R Smith, Dinesh Aggarwal, Charlotte J Houldcroft, Mathew A Beale

Elife· March 2021

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Yaws re-emergence and bacterial drug resistance selection after mass administration of azithromycin: a genomic epidemiology investigation.
Mathew A Beale, Marc Noguera-Julian, Charmie Godornes, Maria Casadellà, Camila González-Beiras

Lancet Microbe· October 2020

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Archaeogenetics: What Can Ancient Genomes Tell Us about the Origin of Syphilis?
Mathew A Beale, Sheila A Lukehart

Curr Biol· October 2020

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Whole genome sequencing of Herpes Simplex Virus 1 directly from human cerebrospinal fluid reveals selective constraints in neurotropic viruses.
Florent Lassalle, Mathew A Beale, Tehmina Bharucha, Charlotte A Williams, Rachel J Williams

Virus Evol· January 2020

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Genomic epidemiology of syphilis reveals independent emergence of macrolide resistance across multiple circulating lineages.
Mathew A Beale, Michael Marks, Sharon K Sahi, Lauren C Tantalo, Achyuta V Nori

Nat Commun· July 2019

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