Publications by authors named "Mathews James"

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Integration of peripheral blood- and tissue-based biomarkers of response to immune checkpoint blockade in urothelial carcinoma.
Rami S Vanguri, James W Smithy, Yanyun Li, Mingqiang Zhuang, Colleen A Maher, James C Mathews

J Pathol· November 2023

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Vis-SPLIT: Interactive Hierarchical Modeling for mRNA Expression Classification.
Braden Roper, James C Mathews, Saad Nadeem, Ji Hwan Park

IEEE Vis Conf· October 2023

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A guide to the BRAIN Initiative Cell Census Network data ecosystem.
Michael Hawrylycz, Maryann E Martone, Giorgio A Ascoli, Jan G Bjaalie, Hong-Wei Dong, James Gee, James Mathews

PLoS Biol· June 2023

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Tumor Immune Microenvironment and Response to Neoadjuvant Chemotherapy in Hormone Receptor/HER2+ Early Stage Breast Cancer.
Rami S Vanguri, Kathleen M Fenn, Matthew R Kearney, Qi Wang, Hua Guo, James C Mathews

Clin Breast Cancer· August 2022

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aWCluster: A Novel Integrative Network-Based Clustering of Multiomics for Subtype Analysis of Cancer Data.
Maryam Pouryahya, Jung Hun Oh, Pedram Javanmard, James C Mathews, Zehor Belkhatir

IEEE/ACM Trans Comput Biol Bioinform· June 2022

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Robotic fluorescence-guided anatomical segment IVb and V liver resection with radical lymphadenectomy for gall bladder cancer.
Raja Kalayarasan, Sankar Narayanan, Mathews James

J Minim Access Surg· January 2022

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Pan-Cancer Prediction of Cell-Line Drug Sensitivity Using Network-Based Methods.
Maryam Pouryahya, Jung Hun Oh, James C Mathews, Zehor Belkhatir, Caroline Moosmüller

Int J Mol Sci· January 2022

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Building artificial genetic circuits to understand protein function.
Louis H Scott, James C Mathews, Aleksandra Filipovska, Oliver Rackham

Methods Enzymol· May 2021

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Laparoscopic hepatopancreatoduodenectomy for locally advanced gall bladder cancer.
Mathews James, Raja Kalayarasan, Senthil Gnanasekaran, Biju Pottakkat

J Minim Access Surg· January 2021

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A case of unusual evisceration through laparoscopic port site.
Mathews James, G Senthil, R Kalayarasan, Biju Pottakkat

J Minim Access Surg· January 2021

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Cardiolipin is required for membrane docking of mitochondrial ribosomes and protein synthesis.
Richard G Lee, Junjie Gao, Stefan J Siira, Anne-Marie Shearwood, Judith A Ermer, James C Mathews

J Cell Sci· July 2020

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Functional network analysis reveals an immune tolerance mechanism in cancer.
James C Mathews, Saad Nadeem, Maryam Pouryahya, Zehor Belkhatir, Joseph O Deasy

Proc Natl Acad Sci U S A· July 2020

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Robust and interpretable PAM50 reclassification exhibits survival advantage for myoepithelial and immune phenotypes.
James C Mathews, Saad Nadeem, Arnold J Levine, Maryam Pouryahya, Joseph O Deasy

NPJ Breast Cancer· September 2019

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Molecular phenotyping using networks, diffusion, and topology: soft tissue sarcoma.
James C Mathews, Maryam Pouryahya, Caroline Moosmüller, Yannis G Kevrekidis, Joseph O Deasy

Sci Rep· September 2019

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Disposition of tris(4-chlorophenyl)methanol and tris(4-chlorophenyl)methane in male and female Harlan Sprague Dawley rats and B6C3F1/N mice following oral and intravenous administration.
Natasha R Catlin, Suramya Waidyanatha, Sherry R Black, James M Mathews, Rodney W Snyder

Xenobiotica· April 2019

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Metabolism and disposition of 2-ethylhexyl-p-methoxycinnamate following oral gavage and dermal exposure in Harlan Sprague Dawley rats and B6C3F1/N mice and in hepatocytes in vitro.
Timothy R Fennell, James M Mathews, Rodney W Snyder, Yan Hong, Scott L Watson

Xenobiotica· November 2018

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Disposition of [C]hydroquinone in Harlan Sprague-Dawley rats and B6C3F1/N mice: species and route comparison.
Sherry R Black, Timothy R Fennell, James M Mathews, Rodney W Snyder, Purvi R Patel

Xenobiotica· November 2018

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An Artificial Yeast Genetic Circuit Enables Deep Mutational Scanning of an Antimicrobial Resistance Protein.
Louis H Scott, James C Mathews, Gavin R Flematti, Aleksandra Filipovska, Oliver Rackham

ACS Synth Biol· August 2018

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Characterizing Cancer Drug Response and Biological Correlates: A Geometric Network Approach.
Maryam Pouryahya, Jung Hun Oh, James C Mathews, Joseph O Deasy, Allen R Tannenbaum

Sci Rep· April 2018

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ECG of the Month.
James S Mathews, Amanda E Coleman, Clarke E Atkins

J Am Vet Med Assoc· January 2017

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Disposition of bisphenol AF, a bisphenol A analogue, in hepatocytes in vitro and in male and female Harlan Sprague-Dawley rats and B6C3F1/N mice following oral and intravenous administration.
Suramya Waidyanatha, James M Mathews, Purvi R Patel, Sherry R Black, Rodney W Snyder

Xenobiotica· June 2016

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Rectal adenocarcinoma infiltrating the bulbar urethra and metastasising to the penis.
Mathews James, Anandhi Amaranathan, Vishnu Prasad Nelamangala Ramakrishnaiah, Pampa Chakrabarty Toi

BMJ Case Rep· June 2016

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Inhibiting monoacylglycerol acyltransferase 1 ameliorates hepatic metabolic abnormalities but not inflammation and injury in mice.
Nisreen Soufi, Angela M Hall, Zhouji Chen, Jun Yoshino, Sara L Collier, James C Mathews

J Biol Chem· October 2014

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Dietary administration of paraquat for 13 weeks does not result in a loss of dopaminergic neurons in the substantia nigra of C57BL/6J mice.
Daniel J Minnema, Kim Z Travis, Charles B Breckenridge, Nicholas C Sturgess, Mark Butt, James M Mathews

Regul Toxicol Pharmacol· March 2014

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Characterization of translocations in mesenchymal hamartoma and undifferentiated embryonal sarcoma of the liver.
James Mathews, Eric J Duncavage, John D Pfeifer

Exp Mol Pathol· December 2013

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