Publications by authors named "Mathieu Charles"

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Immune cell-resolved transcriptomics provides insights into the basis for variations of fish genetic resistance to viral disease.
Thomas C Clark, Valentin Thomas, Richard S Taylor, Mathieu Charles, Audrey Laurent

BMC Biol· November 2025

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Empowering bioinformatics communities with Nextflow and nf-core.
Björn E Langer, Andreia Amaral, Marie-Odile Baudement, Franziska Bonath, Mathieu Charles

Genome Biol· July 2025

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Genetic regulation of gene expression across multiple tissues in chickens.
Dailu Guan, Zhonghao Bai, Xiaoning Zhu, Conghao Zhong, Yali Hou, Mathieu Charles

Nat Genet· May 2025

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Functional impact of splicing variants in the elaboration of complex traits in cattle.
Mathieu Charles, Nicolas Gaiani, Marie-Pierre Sanchez, Mekki Boussaha, Chris Hozé

Nat Commun· April 2025

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Identification of a functional single nucleotide polymorphism in the FASN promoter associated with milk fat traits in dairy cattle.
Mélissa Poncet, Maureen Féménia, Mathieu Charles, Maxime Ben Braiek, Lorraine Bourgeois-Brunel

Anim Genet· December 2024

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Massive detection of cryptic recessive genetic defects in dairy cattle mining millions of life histories.
Florian Besnard, Ana Guintard, Cécile Grohs, Laurence Guzylack-Piriou, Margarita Cano, Mathieu Charles

Genome Biol· September 2024

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Nuclear sequences of mitochondrial origin in domestic yak.
Mélissa Poncet, Maureen Féménia, Clémence Pierre, Mathieu Charles, Aurélien Capitan

Sci Rep· May 2024

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Enriched atlas of lncRNA and protein-coding genes for the GRCg7b chicken assembly and its functional annotation across 47 tissues.
Fabien Degalez, Mathieu Charles, Sylvain Foissac, Haijuan Zhou, Dailu Guan

Sci Rep· March 2024

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A compendium of genetic regulatory effects across pig tissues.
Jinyan Teng, Yahui Gao, Hongwei Yin, Zhonghao Bai, Shuli Liu, Mathieu Charles

Nat Genet· January 2024

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A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants.
Edward S Rice, Antton Alberdi, James Alfieri, Giridhar Athrey, Jennifer R Balacco, Mathieu Charles

BMC Biol· November 2023

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Fourth Report on Chicken Genes and Chromosomes 2022.
Jacqueline Smith, James M Alfieri, Nick Anthony, Peter Arensburger, Giridhar N Athrey, Mathieu Charles

Cytogenet Genome Res· January 2023

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Development of a High-Density 665 K SNP Array for Rainbow Trout Genome-Wide Genotyping.
Maria Bernard, Audrey Dehaullon, Guangtu Gao, Katy Paul, Henri Lagarde, Mathieu Charles, Charles Poncet

Front Genet· July 2022

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Sources of variation of DNA methylation in rainbow trout: combined effects of temperature and genetic background.
Delphine Lallias, Maria Bernard, Céline Ciobotaru, Nicolas Dechamp, Laurent Labbé, Mathieu Charles

Epigenetics· September 2021

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Effectiveness of two intramuscular combined vaccines for the control of Mycoplasma hyopneumoniae and porcine circovirus type 2 in growing pigs: a randomized field trial.
Gwenaël Boulbria, Sophie Brilland, Charlotte Teixeira-Costa, Mathieu Brissonnier, Mathieu Charles

Porcine Health Manag· June 2021

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Sequence-based GWAS and post-GWAS analyses reveal a key role of SLC37A1, ANKH, and regulatory regions on bovine milk mineral content.
Marie-Pierre Sanchez, Dominique Rocha, Mathieu Charles, Mekki Boussaha, Chris Hozé

Sci Rep· April 2021

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Whole-genome sequencing reveals insights into the adaptation of French Charolais cattle to Cuban tropical conditions.
Lino C Ramírez-Ayala, Dominique Rocha, Sebas E Ramos-Onsins, Jordi Leno-Colorado, Mathieu Charles

Genet Sel Evol· January 2021

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Genetic determinism of spontaneous masculinisation in XX female rainbow trout: new insights using medium throughput genotyping and whole-genome sequencing.
Clémence Fraslin, Florence Phocas, Anastasia Bestin, Mathieu Charles, Maria Bernard, Charles Poncet

Sci Rep· October 2020

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Importance of the Major Histocompatibility Complex (Swine Leukocyte Antigen) in Swine Health and Biomedical Research.
Sabine E Hammer, Chak-Sum Ho, Asako Ando, Claire Rogel-Gaillard, Mathieu Charles

Annu Rev Anim Biosci· February 2020

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Survey of mitochondrial sequences integrated into the bovine nuclear genome.
Erwin Tramontin Grau, Mathieu Charles, Maureen Féménia, Emmanuelle Rebours, Anne Vaiman

Sci Rep· February 2020

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Α de novo 3.8-Mb inversion affecting the EDA and XIST genes in a heterozygous female calf with generalized hypohidrotic ectodermal dysplasia.
Clémentine Escouflaire, Emmanuelle Rebours, Mathieu Charles, Sébastien Orellana, Margarita Cano

BMC Genomics· September 2019

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DNAJC2 is required for mouse early embryonic development.
Louise Helary, Johan Castille, Bruno Passet, Anne Vaiman, Christian Beauvallet, Mathieu Charles

Biochem Biophys Res Commun· August 2019

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Genome-wide estimates of genetic diversity, inbreeding and effective size of experimental and commercial rainbow trout lines undergoing selective breeding.
Jonathan D'Ambrosio, Florence Phocas, Pierrick Haffray, Anastasia Bestin, Sophie Brard-Fudulea, Charles Poncet, Mathieu Charles

Genet Sel Evol· June 2019

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Domestic Fowl Breed Variation in Egg White Protein Expression: Application of Proteomics and Transcriptomics.
Barbora Bílková, Zuzana Świderská, Lukáš Zita, Denis Laloë, Mathieu Charles

J Agric Food Chem· November 2018

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Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
Boulos Chalhoub, France Denoeud, Shengyi Liu, Isobel A P Parkin, Haibao Tang, Mathieu Charles

Science· August 2014

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Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat.
Zengcui Zhang, Harry Belcram, Piotr Gornicki, Mathieu Charles, Jérémy Just

Proc Natl Acad Sci U S A· November 2011

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