Publications by authors named "Mathieu Courcelles"

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CDK4/6 inhibition reprograms the breast cancer immunopeptidome via Rb-dependent chromatin and transcriptomic remodeling.
Robin Minati, Maxime Cahuzac, Julie Perrault, Véronique Lullier, Anca Apavaloaei, Mathieu Courcelles

Cell Rep· December 2025

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Tumor antigens preferentially derive from unmutated genomic sequences in melanoma and non-small cell lung cancer.
Anca Apavaloaei, Qingchuan Zhao, Leslie Hesnard, Maxime Cahuzac, Chantal Durette, Mathieu Courcelles

Nat Cancer· August 2025

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Machine learning-enhanced immunopeptidomics applied to T-cell epitope discovery for COVID-19 vaccines.
Kevin A Kovalchik, David J Hamelin, Peter Kubiniok, Benoîte Bourdin, Fatima Mostefai, Mathieu Courcelles

Nat Commun· November 2024

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Breast cancer immunopeptidomes contain numerous shared tumor antigens.
Eralda Kina, Jean-Philippe Laverdure, Chantal Durette, Joël Lanoix, Mathieu Courcelles

J Clin Invest· January 2024

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SUMO Proteomics Analyses Identify Protein Inhibitor of Activated STAT-Mediated Regulatory Networks Involved in Cell Cycle and Cell Proliferation.
Chongyang Li, Alison Boutet, Cristina Mirela Pascariu, Trent Nelson, Mathieu Courcelles

J Proteome Res· March 2023

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Induced pluripotent stem cells display a distinct set of MHC I-associated peptides shared by human cancers.
Anca Apavaloaei, Leslie Hesnard, Marie-Pierre Hardy, Basma Benabdallah, Gregory Ehx, Mathieu Courcelles

Cell Rep· August 2022

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Immunopeptidomic analyses of colorectal cancers with and without microsatellite instability.
Jenna Cleyle, Marie-Pierre Hardy, Robin Minati, Mathieu Courcelles, Chantal Durette

Mol Cell Proteomics· May 2022

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Head-to-tail cyclization of side chain-protected linear peptides to recapitulate genetically-encoded cyclized peptides.
Samir Bouayad-Gervais, Daniel J St-Cyr, Mathieu Courcelles, Éric Bonneil, Florence H Gohard

Pept Sci (Hoboken)· May 2022

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MhcVizPipe: A Quality Control Software for Rapid Assessment of Small- to Large-Scale Immunopeptidome Datasets.
Kevin A Kovalchik, Qing Ma, Laura Wessling, Frederic Saab, Jérôme D Duquette, Mathieu Courcelles

Mol Cell Proteomics· January 2022

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CAMAP: Artificial neural networks unveil the role of codon arrangement in modulating MHC-I peptides presentation.
Tariq Daouda, Maude Dumont-Lagacé, Albert Feghaly, Yahya Benslimane, Rébecca Panes, Mathieu Courcelles

PLoS Comput Biol· October 2021

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Most non-canonical proteins uniquely populate the proteome or immunopeptidome.
Maria Virginia Ruiz Cuevas, Marie-Pierre Hardy, Jaroslav Hollý, Éric Bonneil, Chantal Durette, Mathieu Courcelles

Cell Rep· March 2021

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Extending the Comprehensiveness of Immunopeptidome Analyses Using Isobaric Peptide Labeling.
Sibylle Pfammatter, Eric Bonneil, Joel Lanoix, Krystel Vincent, Marie-Pierre Hardy, Mathieu Courcelles

Anal Chem· July 2020

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Proteogenomics Uncovers a Vast Repertoire of Shared Tumor-Specific Antigens in Ovarian Cancer.
Qingchuan Zhao, Jean-Philippe Laverdure, Joël Lanoix, Chantal Durette, Caroline Côté, Mathieu Courcelles

Cancer Immunol Res· April 2020

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MAPDP: A Cloud-Based Computational Platform for Immunopeptidomics Analyses.
Mathieu Courcelles, Chantal Durette, Tariq Daouda, Jean-Philippe Laverdure, Krystel Vincent

J Proteome Res· April 2020

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Noncoding regions are the main source of targetable tumor-specific antigens.
Céline M Laumont, Krystel Vincent, Leslie Hesnard, Éric Audemard, Éric Bonneil, Mathieu Courcelles

Sci Transl Med· December 2018

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Comparison of the MHC I Immunopeptidome Repertoire of B-Cell Lymphoblasts Using Two Isolation Methods.
Joël Lanoix, Chantal Durette, Mathieu Courcelles, Émilie Cossette, Simon Comtois-Marotte

Proteomics· June 2018

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The SysteMHC Atlas project.
Wenguang Shao, Patrick G A Pedrioli, Witold Wolski, Cristian Scurtescu, Emanuel Schmid, Mathieu Courcelles

Nucleic Acids Res· January 2018

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CLMSVault: A Software Suite for Protein Cross-Linking Mass-Spectrometry Data Analysis and Visualization.
Mathieu Courcelles, Jasmin Coulombe-Huntington, Émilie Cossette, Anne-Claude Gingras, Pierre Thibault

J Proteome Res· July 2017

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MHC class I-associated peptides derive from selective regions of the human genome.
Hillary Pearson, Tariq Daouda, Diana Paola Granados, Chantal Durette, Eric Bonneil, Mathieu Courcelles

J Clin Invest· December 2016

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Gpr161 anchoring of PKA consolidates GPCR and cAMP signaling.
Verena A Bachmann, Johanna E Mayrhofer, Ronit Ilouz, Philipp Tschaikner, Philipp Raffeiner, Mathieu Courcelles

Proc Natl Acad Sci U S A· July 2016

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Phosphoproteome dynamics reveal novel ERK1/2 MAP kinase substrates with broad spectrum of functions.
Mathieu Courcelles, Christophe Frémin, Laure Voisin, Sébastien Lemieux, Sylvain Meloche

Mol Syst Biol· May 2013

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Occurrence and detection of phosphopeptide isomers in large-scale phosphoproteomics experiments.
Mathieu Courcelles, Gaëlle Bridon, Sébastien Lemieux, Pierre Thibault

J Proteome Res· July 2012

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ProteoConnections: a bioinformatics platform to facilitate proteome and phosphoproteome analyses.
Mathieu Courcelles, Sébastien Lemieux, Laure Voisin, Sylvain Meloche, Pierre Thibault

Proteomics· July 2011

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Phosphorylation network rewiring by gene duplication.
Luca Freschi, Mathieu Courcelles, Pierre Thibault, Stephen W Michnick, Christian R Landry

Mol Syst Biol· July 2011

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A novel proteomics approach to identify SUMOylated proteins and their modification sites in human cells.
Frederic Galisson, Louiza Mahrouche, Mathieu Courcelles, Eric Bonneil, Sylvain Meloche

Mol Cell Proteomics· February 2011

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