Publications by authors named "Matteo Osella"

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The intrinsic dimension of gene expression during cell differentiation.
Marta Biondo, Niccolò Cirone, Filippo Valle, Silvia Lazzardi, Michele Caselle, Matteo Osella

Nucleic Acids Res· August 2025

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Exploring the latent space of transcriptomic data with topic modeling.
Filippo Valle, Michele Caselle, Matteo Osella

NAR Genom Bioinform· June 2025

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Topic modeling analysis of the Allen Human Brain Atlas.
Letizia Pizzini, Filippo Valle, Matteo Osella, Michele Caselle

Sci Rep· February 2025

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Out-of-equilibrium gene expression fluctuations in the presence of extrinsic noise.
Marta Biondo, Abhyudai Singh, Michele Caselle, Matteo Osella

Phys Biol· August 2023

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Emergent statistical laws in single-cell transcriptomic data.
Silvia Lazzardi, Filippo Valle, Andrea Mazzolini, Antonio Scialdone, Michele Caselle, Matteo Osella

Phys Rev E· April 2023

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Protein degradation sets the fraction of active ribosomes at vanishing growth.
Ludovico Calabrese, Jacopo Grilli, Matteo Osella, Christopher P Kempes, Marco Cosentino Lagomarsino

PLoS Comput Biol· May 2022

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A 3D transcriptomics atlas of the mouse nose sheds light on the anatomical logic of smell.
Mayra L Ruiz Tejada Segura, Eman Abou Moussa, Elisa Garabello, Thiago S Nakahara, Melanie Makhlouf, Matteo Osella

Cell Rep· March 2022

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Multiomics Topic Modeling for Breast Cancer Classification.
Filippo Valle, Matteo Osella, Michele Caselle

Cancers (Basel)· February 2022

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The impact of whole genome duplications on the human gene regulatory networks.
Francesco Mottes, Chiara Villa, Matteo Osella, Michele Caselle

PLoS Comput Biol· December 2021

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The Dynamics of Aerotaxis in a Simple Eukaryotic Model.
Marta Biondo, Cristina Panuzzo, Shahzad M Ali, Salvatore Bozzaro, Matteo Osella

Front Cell Dev Biol· November 2021

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Initial cell density encodes proliferative potential in cancer cell populations.
Chiara Enrico Bena, Marco Del Giudice, Alice Grob, Thomas Gueudré, Mattia Miotto, Matteo Osella

Sci Rep· March 2021

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A Topic Modeling Analysis of TCGA Breast and Lung Cancer Transcriptomic Data.
Filippo Valle, Matteo Osella, Michele Caselle

Cancers (Basel)· December 2020

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A Model-Driven Quantitative Analysis of Retrotransposon Distributions in the Human Genome.
Andrea Riba, Maria Rita Fumagalli, Michele Caselle, Matteo Osella

Genome Biol Evol· November 2020

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Investigating the epi-miRNome: identification of epi-miRNAs using transfection experiments.
Elisa Reale, Daniela Taverna, Laura Cantini, Loredana Martignetti, Matteo Osella

Epigenomics· November 2019

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Concurrent processes set cell division.
Gabriele Micali, Jacopo Grilli, Matteo Osella, Marco Cosentino Lagomarsino

Sci Adv· November 2018

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Dissecting the Control Mechanisms for DNA Replication and Cell Division in E. coli.
Gabriele Micali, Jacopo Grilli, Jacopo Marchi, Matteo Osella, Marco Cosentino Lagomarsino

Cell Rep· October 2018

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The Empirical Fluctuation Pattern of Division Control.
Jacopo Grilli, Clotilde Cadart, Gabriele Micali, Matteo Osella, Marco Cosentino Lagomarsino

Front Microbiol· July 2018

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Zipf and Heaps laws from dependency structures in component systems.
Andrea Mazzolini, Jacopo Grilli, Eleonora De Lazzari, Matteo Osella, Marco Cosentino Lagomarsino

Phys Rev E· July 2018

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Modelling the evolution of transcription factor binding preferences in complex eukaryotes.
Antonio Rosanova, Alberto Colliva, Matteo Osella, Michele Caselle

Sci Rep· August 2017

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Step by Step, Cell by Cell: Quantification of the Bacterial Cell Cycle.
Matteo Osella, Sander J Tans, Marco Cosentino Lagomarsino

Trends Microbiol· April 2017

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Relevant parameters in models of cell division control.
Jacopo Grilli, Matteo Osella, Andrew S Kennard, Marco Cosentino Lagomarsino

Phys Rev E· March 2017

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Stochastic timing in gene expression for simple regulatory strategies.
Alma Dal Co, Marco Cosentino Lagomarsino, Michele Caselle, Matteo Osella

Nucleic Acids Res· February 2017

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Individuality and universality in the growth-division laws of single E. coli cells.
Andrew S Kennard, Matteo Osella, Avelino Javer, Jacopo Grilli, Philippe Nghe

Phys Rev E· January 2016

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Stochasticity and homeostasis in the E. coli replication and division cycle.
Aileen Adiciptaningrum, Matteo Osella, M Charl Moolman, Marco Cosentino Lagomarsino, Sander J Tans

Sci Rep· December 2015

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Interplay of microRNA and epigenetic regulation in the human regulatory network.
Matteo Osella, Andrea Riba, Alessandro Testori, Davide Corà, Michele Caselle

Front Genet· October 2014

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