Publications by authors named "Matthew Copeland"

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Contemporary Clinical Management of Otosyphilis for Practicing Otolaryngologists-A Scoping Review.
Corinne A Pittman, Hudson Liu, Sandeep Kowkuntla, Erica Choe, Matthew J Copeland

Laryngoscope· December 2025

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Dockground: Expanding the Resource to Protein-DNA Complexes.
Keeley W Collins, Matthew M Copeland, Petras J Kundrotas, Ilya A Vakser

J Mol Biol· November 2025

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Dockground: The Resource Expands to Protein-RNA Interactome.
Keeley W Collins, Matthew M Copeland, Petras J Kundrotas, Ilya A Vakser

J Mol Biol· August 2025

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GRAMMCell: Docking-based Cell Modeling Resource.
Amar Singh, Andrii M Tytarenko, Vineeth Kumar Ambati, Matthew M Copeland, Petras J Kundrotas

J Mol Biol· August 2025

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Modeling CAPRI Targets of Round 55 by Combining AlphaFold and Docking.
Amar Singh, Matthew M Copeland, Petras J Kundrotas, Ilya A Vakser

Proteins· June 2025

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Highly Optimized Simulation of Atomic Resolution Cell-Like Protein Environment.
Andrii M Tytarenko, Amar Singh, Vineeth Kumar Ambati, Matthew M Copeland, Petras J Kundrotas

J Phys Chem B· March 2025

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Hepatocyte-specific Epidermal Growth Factor Receptor Deletion Promotes Fibrosis but has no Effect on Steatosis in Fast-food Diet Model of Metabolic Dysfunction-associated Steatotic Liver Disease.
Shehnaz Bano, Matthew A Copeland, John W Stoops, Anne Orr, Siddhi Jain

Cell Mol Gastroenterol Hepatol· September 2024

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Diagnosis, prevention and risk-management of drug-induced liver injury due to medications used to treat mycobacterium tuberculosis.
James H Lewis, Serena Y Korkmaz, Courtney A Rizk, Matthew J Copeland

Expert Opin Drug Saf· September 2024

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CAPRI-Q: The CAPRI resource evaluating the quality of predicted structures of protein complexes.
Keeley W Collins, Matthew M Copeland, Guillaume Brysbaert, Shoshana J Wodak, Alexandre M J J Bonvin

J Mol Biol· September 2024

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GRAMM Web Server for Protein Docking.
Amar Singh, Matthew M Copeland, Petras J Kundrotas, Ilya A Vakser

Methods Mol Biol· September 2023

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General features of transmembrane beta barrels from a large database.
Daniel Montezano, Rebecca Bernstein, Matthew M Copeland, Joanna S G Slusky

Proc Natl Acad Sci U S A· July 2023

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Monkeypox-Associated Central Nervous System Disease: A Case Series and Review.
Kelli M Money, T Allen Barnett, Samuel Rapaka, Rebecca Osborn, Takashi Kitani, Matthew J Copeland

Ann Neurol· May 2023

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MAHOMES II: A webserver for predicting if a metal binding site is enzymatic.
Ryan Feehan, Matthew Copeland, Meghan W Franklin, Joanna S G Slusky

Protein Sci· April 2023

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MAHOMES II: A webserver for predicting if a metal binding site is enzymatic.
Ryan Feehan, Matthew Copeland, Meghan W Franklin, Joanna S G Slusky

bioRxiv· March 2023

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Dockground resource for protein recognition studies.
Keeley W Collins, Matthew M Copeland, Ian Kotthoff, Amar Singh, Petras J Kundrotas

Protein Sci· December 2022

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Two Cases of Monkeypox-Associated Encephalomyelitis - Colorado and the District of Columbia, July-August 2022.
Daniel M Pastula, Matthew J Copeland, Markus C Hannan, Samuel Rapaka, Takashi Kitani

MMWR Morb Mortal Wkly Rep· September 2022

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Gaussian Accelerated Molecular Dynamics in OpenMM.
Matthew M Copeland, Hung N Do, Lane Votapka, Keya Joshi, Jinan Wang

J Phys Chem B· August 2022

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Lymphocyte-Specific Protein-1 Suppresses Xenobiotic-Induced Constitutive Androstane Receptor and Subsequent Yes-Associated Protein-Activated Hepatocyte Proliferation.
Kelly Koral, Bharat Bhushan, Anne Orr, John Stoops, William C Bowen, Matthew A Copeland

Am J Pathol· June 2022

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GWYRE: A Resource for Mapping Variants onto Experimental and Modeled Structures of Human Protein Complexes.
Sukhaswami Malladi, Harold R Powell, Alessia David, Suhail A Islam, Matthew M Copeland

J Mol Biol· June 2022

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The microbial gbu gene cluster links cardiovascular disease risk associated with red meat consumption to microbiota L-carnitine catabolism.
Jennifer A Buffa, Kymberleigh A Romano, Matthew F Copeland, David B Cody, Weifei Zhu

Nat Microbiol· January 2022

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Fatal donor-derived Kaposi sarcoma following liver transplantation.
Matthew Moore McCrea Copeland, James Trainor, W Johnny Cash, Conor Braniff

BMJ Case Rep· June 2021

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Dockground Tool for Development and Benchmarking of Protein Docking Procedures.
Petras J Kundrotas, Ian Kotthoff, Sherman W Choi, Matthew M Copeland, Ilya A Vakser

Methods Mol Biol· March 2021

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l-Carnitine in omnivorous diets induces an atherogenic gut microbial pathway in humans.
Robert A Koeth, Betzabe Rachel Lam-Galvez, Jennifer Kirsop, Zeneng Wang, Bruce S Levison, Matthew F Copeland

J Clin Invest· January 2019

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Dockground: A comprehensive data resource for modeling of protein complexes.
Petras J Kundrotas, Ivan Anishchenko, Taras Dauzhenka, Ian Kotthoff, Daniil Mnevets, Matthew M Copeland

Protein Sci· January 2018

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A transcription activator-like effector (TALE) induction system mediated by proteolysis.
Matthew F Copeland, Mark C Politz, Charles B Johnson, Andrew L Markley, Brian F Pfleger

Nat Chem Biol· April 2016

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