Publications by authors named "Matthew D Berg"

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Mistranslating tRNA variants impact the proteome and phosphoproteome of Saccharomyces cerevisiae.
Matthew D Berg, Alexis T Chang, Ricard A Rodriguez-Mias, Judit Villén

G3 (Bethesda)· December 2025

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Carafe enables high quality in silico spectral library generation for data-independent acquisition proteomics.
Bo Wen, Chris Hsu, David Shteynberg, Wen-Feng Zeng, Michael Riffle, Matthew D Berg

Nat Commun· November 2025

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Mistranslating tRNA variants impact the proteome and phosphoproteome of .
Matthew D Berg, Alexis T Chang, Ricard A Rodriguez-Mias, Judit Villén

bioRxiv· September 2025

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Carafe enables high quality spectral library generation for data-independent acquisition proteomics.
Bo Wen, Chris Hsu, David Shteynberg, Wen-Feng Zeng, Michael Riffle, Matthew D Berg

bioRxiv· August 2025

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R2HaPpY: Rapid-robust phosphotyrosine peptide enrichment using HaloTag-Src SH2 pY superbinder.
Alexis Chang, Ricard A Rodriguez-Mias, Matthew D Berg, Sophie Moggridge, Judit Villén

bioRxiv· May 2025

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TUDCA modulates drug bioavailability to regulate resistance to acute ER stress in .
Sarah R Chadwick, Samuel Stack-Couture, Matthew D Berg, Sonja Di Gregorio, Bryan Lung

Mol Biol Cell· February 2025

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High-throughput identification of calcium-regulated proteins across diverse proteomes.
Timothy M Locke, Rose Fields, Hayden Gizinski, George M Otto, Melissa J S MacEwen, Matthew D Berg

Cell Rep· November 2024

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Impact of tRNA-induced proline-to-serine mistranslation on the transcriptome of Drosophila melanogaster.
Joshua R Isaacson, Matthew D Berg, William Yeung, Judit Villén, Christopher J Brandl

G3 (Bethesda)· September 2024

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Mistranslating tRNA variants have anticodon- and sex-specific impacts on Drosophila melanogaster.
Joshua R Isaacson, Matthew D Berg, Jessica Jagiello, William Yeung, Brendan Charles

G3 (Bethesda)· September 2024

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Mistranslating tRNA variants have anticodon- and sex-specific impacts on .
Joshua R Isaacson, Matthew D Berg, Jessica Jagiello, William Yeung, Brendan Charles

bioRxiv· June 2024

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Impact of tRNA-induced proline-to-serine mistranslation on the transcriptome of .
Joshua R Isaacson, Matthew D Berg, William Yeung, Judit Villén, Christopher J Brandl

bioRxiv· May 2024

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High-Throughput Identification of Calcium Regulated Proteins Across Diverse Proteomes.
Timothy M Locke, Rose Fields, Hayden Gizinski, George M Otto, David M Shechner, Matthew D Berg

bioRxiv· January 2024

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Analysis of financial challenges faced by graduate students in Canada.
Sarah Jane Laframboise, Thomas Bailey, Anh-Thu Dang, Mercedes Rose, Zier Zhou, Matthew D Berg

Biochem Cell Biol· August 2023

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Tra1 controls the transcriptional landscape of the aging cell.
Khaleda Afrin Bari, Matthew D Berg, Julie Genereaux, Christopher J Brandl, Patrick Lajoie

G3 (Bethesda)· January 2023

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Anticodon sequence determines the impact of mistranslating tRNA variants.
Ecaterina Cozma, Megha Rao, Madison Dusick, Julie Genereaux, Ricard A Rodriguez-Mias, Matthew D Berg

RNA Biol· January 2023

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Genetic background and mistranslation frequency determine the impact of mistranslating tRNASerUGG.
Matthew D Berg, Yanrui Zhu, Raphaël Loll-Krippleber, Bryan-Joseph San Luis, Julie Genereaux

G3 (Bethesda)· July 2022

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A novel mistranslating tRNA model in Drosophila melanogaster has diverse, sexually dimorphic effects.
Joshua R Isaacson, Matthew D Berg, Brendan Charles, Jessica Jagiello, Judit Villén

G3 (Bethesda)· May 2022

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Regulating Expression of Mistranslating tRNAs by Readthrough RNA Polymerase II Transcription.
Matthew D Berg, Joshua R Isaacson, Ecaterina Cozma, Julie Genereaux, Patrick Lajoie

ACS Synth Biol· November 2021

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The SAGA and NuA4 component Tra1 regulates Candida albicans drug resistance and pathogenesis.
Iqra Razzaq, Matthew D Berg, Yuwei Jiang, Julie Genereaux, Deeva Uthayakumar

Genetics· October 2021

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The amino acid substitution affects cellular response to mistranslation.
Matthew D Berg, Yanrui Zhu, Bianca Y Ruiz, Raphaël Loll-Krippleber, Joshua Isaacson

G3 (Bethesda)· September 2021

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Transfer RNAs: diversity in form and function.
Matthew D Berg, Christopher J Brandl

RNA Biol· March 2021

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Chemical-Genetic Interactions with the Proline Analog L-Azetidine-2-Carboxylic Acid in .
Matthew D Berg, Yanrui Zhu, Joshua Isaacson, Julie Genereaux, Raphaël Loll-Krippleber

G3 (Bethesda)· December 2020

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Mistranslating tRNA identifies a deleterious S213P mutation in the allele.
Yanrui Zhu, Matthew D Berg, Phoebe Yang, Raphaël Loll-Krippleber, Grant W Brown

Biochem Cell Biol· October 2020

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Targeted sequencing reveals expanded genetic diversity of human transfer RNAs.
Matthew D Berg, Daniel J Giguere, Jacqueline S Dron, Jeremy T Lant, Julie Genereaux

RNA Biol· November 2019

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Modulating Mistranslation Potential of tRNA in .
Matthew D Berg, Yanrui Zhu, Julie Genereaux, Bianca Y Ruiz, Ricard A Rodriguez-Mias

Genetics· November 2019

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