Publications by authors named "Matthew D Clark"

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Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samples.
Samuel Martin, Darren Heavens, Yuxuan Lan, Samuel Horsfield, Matthew D Clark, Richard M Leggett

Genome Biol· January 2022

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Elucidation of the 'Honeycrisp' pedigree through haplotype analysis with a multi-family integrated SNP linkage map and a large apple (×) pedigree-connected SNP data set.
Nicholas P Howard, Eric van de Weg, David S Bedford, Cameron P Peace, Stijn Vanderzande, Matthew D Clark, Soon Li Teh, Lichun Cai, James J Luby

February 2017

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Real-time analysis and visualization of nanopore metagenomic samples with MARTi.
Ned Peel, Samuel Martin, Darren Heavens, Douglas W Yu, Matthew D Clark

Genome Res· November 2025

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From air to insight: the evolution of airborne DNA sequencing technologies.
Mia F G Berelson, Darren Heavens, Paul Nicholson, Matthew D Clark, Richard M Leggett

Microbiology (Reading)· May 2025

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Gabapentinoids Rotation to Duloxetine in Palliative Care Patients With Cancer Receiving Concurrent Opioids.
Matthew D Clark, Patricia Bramati, Grecia Singleton, James Troyer, Paresa Alizadeh

J Pain Symptom Manage· January 2025

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A Snakemake Toolkit for the Batch Assembly, Annotation and Phylogenetic Analysis of Mitochondrial Genomes and Ribosomal Genes From Genome Skims of Museum Collections.
Oliver W White, Andie Hall, Ben W Price, Suzanne T Williams, Matthew D Clark

Mol Ecol Resour· January 2025

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Exome capture of Antarctic krill (Euphausia superba) for cost effective genotyping and population genetics with historical collections.
Oliver W White, Sarah Walkington, Hugh Carter, Lauren Hughes, Melody Clark, Matthew D Clark

Mol Ecol Resour· November 2024

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Genomics-informed captive breeding can reduce inbreeding depression and the genetic load in zoo populations.
Samuel A Speak, Thomas Birley, Chiara Bortoluzzi, Matthew D Clark, Lawrence Percival-Alwyn

Mol Ecol Resour· October 2024

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Reliability of urine drug testing among patients on buprenorphine transdermal patch.
Jaya Amaram-Davila, Akhila Reddy, Matthew D Clark, Anita Nancherla, Joseph Arthur

Palliat Support Care· August 2024

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Measuring air metagenomic diversity in an agricultural ecosystem.
Michael Giolai, Walter Verweij, Samuel Martin, Neil Pearson, Paul Nicholson, Matthew D Clark

Curr Biol· August 2024

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Tools for pathogen genetic surveillance: Lessons from the ash dieback invasion of Europe.
Jessica A Peers, Richard M Leggett, Matthew D Clark, Mark McMullan

PLoS Pathog· May 2024

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Fluoroquinolone-Induced Seizure in a Patient Receiving End-of-Life Care: A Case Report.
Joannis Baez Gonzalez, Matthew D Clark, Eduardo Bruera

J Palliat Med· November 2023

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Deficiencies with CAGE-AID questionnaire in identifying nonmedical opioid use-a report of two cases.
Jaya Amaram-Davila, Patricia Bramati, Laura Gammon, Tarun Mallipeddi, Olivia Jastrzemski, Matthew D Clark

Ann Palliat Med· September 2023

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Grapevine trunk diseases of cold-hardy varieties grown in Northern Midwest vineyards coincide with canker fungi and winter injury.
David H DeKrey, Annie E Klodd, Matthew D Clark, Robert A Blanchette

PLoS One· June 2022

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Impact of Adult (Coleoptera: Scarabaeidae) Foliar Feeding Injury on Fruit Yield and Quality of a Temperate, Cold-Hardy Wine Grape, 'Frontenac'.
Dominique N Ebbenga, Eric C Burkness, Matthew D Clark, William D Hutchison

Front Insect Sci· April 2022

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Evaluation of Antibiotic Initiation Tools in End-of-Life Care.
Matthew D Clark, Zachery Halford, Chris Herndon, Ellen Middendorf

Am J Hosp Palliat Care· March 2022

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Candidate resistance genes to foliar phylloxera identified at Rdv3 of hybrid grape.
Lu Yin, Avinash Karn, Lance Cadle-Davidson, Cheng Zou, Jason Londo, Matthew D Clark

Hortic Res· February 2022

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Pharmacogenomics in Pain Management: A Review of Relevant Gene-Drug Associations and Clinical Considerations.
Emily Brandl, Zachery Halford, Matthew D Clark, Chris Herndon

Ann Pharmacother· December 2021

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Enfortumab Vedotin-ejfv: A First-in-Class Anti-Nectin-4 Antibody-Drug Conjugate for the Management of Urothelial Carcinoma.
Zachery Halford, Mary Kate Anderson, Matthew D Clark

Ann Pharmacother· June 2021

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A low-cost pipeline for soil microbiome profiling.
Anita Bollmann-Giolai, Michael Giolai, Darren Heavens, Iain Macaulay, Jacob Malone, Matthew D Clark

Microbiologyopen· December 2020

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New approaches for metagenome assembly with short reads.
Martin Ayling, Matthew D Clark, Richard M Leggett

Brief Bioinform· March 2020

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Rapid MinION profiling of preterm microbiota and antimicrobial-resistant pathogens.
Richard M Leggett, Cristina Alcon-Giner, Darren Heavens, Shabhonam Caim, Thomas C Brook, Paul Clarke, Matthew D Clark

Nat Microbiol· March 2020

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Plant gene editing through de novo induction of meristems.
Michael F Maher, Ryan A Nasti, Macy Vollbrecht, Colby G Starker, Matthew D Clark

Nat Biotechnol· January 2020

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Spatially resolved transcriptomics reveals plant host responses to pathogens.
Michael Giolai, Walter Verweij, Ashleigh Lister, Darren Heavens, Iain Macaulay, Matthew D Clark

Plant Methods· October 2019

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A critical comparison of technologies for a plant genome sequencing project.
Pirita Paajanen, George Kettleborough, Elena López-Girona, Michael Giolai, Darren Heavens, Matthew D Clark

Gigascience· March 2019

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Independent assessment and improvement of wheat genome sequence assemblies using Fosill jumping libraries.
Fu-Hao Lu, Neil McKenzie, George Kettleborough, Darren Heavens, Matthew D Clark

Gigascience· May 2018

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