Publications by authors named "Matthew Holcomb"

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The Shoulder-Tapping Sign: A Highly Specific Indicator of Neurocognitive Disorders.
Brad T Tyson, Laszlo A Erdodi, Matthew Holcomb, Robert M Roth, Pinky Agarwal

Cogn Behav Neurol· December 2025

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Meeko: Molecule Parametrization and Software Interoperability for Docking and Beyond.
Diogo Santos-Martins, Yiran He, Jerome Eberhardt, Parnika Sharma, Niccolò Bruciaferri, Matthew Holcomb

J Chem Inf Model· December 2025

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The Effect of Visuospatial/Visuoconstructional Impairment on Construct Validity of Figure Copy and Recall: A Test of Two Scoring Systems.
Adrienne A Jankowski, Matthew J Holcomb, Julie A Suhr

Arch Clin Neuropsychol· October 2025

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Design principles of the common Gly-X6-Gly membrane protein building block.
Kiana Golden, Catalina Avarvarei, Charlie T Anderson, Matthew Holcomb, Weiyi Tang

Proc Natl Acad Sci U S A· October 2025

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Structure-based rational design of covalent probes.
Matthew Holcomb, Manuel Llanos, Althea Hansel-Harris, Stefano Forli

Commun Chem· August 2025

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CIAA: Integrated Proteomics and Structural Modeling for Understanding Cysteine Reactivity with Iodoacetamide Alkyne.
Lisa M Boatner, Jerome Eberhardt, Flowreen Shikwana, Matthew Holcomb, Peiyuan Lee

ACS Chem Biol· July 2025

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Design principles of the common Gly-X6-Gly membrane protein building block.
Kiana Golden, Catalina Avarvarei, Charlie T Anderson, Matthew Holcomb, Weiyi Tang

bioRxiv· June 2025

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Logical memory, visual reproduction, and verbal paired associates are effective embedded validity indicators in patients with traumatic brain injury.
Brad T Tyson, Sadie R Pyne, Iulia Crisan, Matthew Calamia, Matthew Holcomb

Appl Neuropsychol Adult· April 2025

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Docking guidance with experimental ligand structural density improves docking pose prediction and virtual screening performance.
Althea T Hansel-Harris, Andreas F Tillack, Diogo Santos-Martins, Matthew Holcomb, Stefano Forli

Protein Sci· March 2025

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An mRNA Display Approach for Covalent Targeting of a Virulence Factor.
Sijie Wang, Emily C Woods, Jeyun Jo, Jiyun Zhu, Althea Hansel-Harris, Matthew Holcomb

J Am Chem Soc· March 2025

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A quantitative analysis of ligand binding at the protein-lipid bilayer interface.
Allison Pearl Barkdull, Matthew Holcomb, Stefano Forli

Commun Chem· March 2025

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IP6, PF74 affect HIV-1 capsid stability through modulation of hexamer-hexamer tilt angle preference.
Chris M Garza, Matthew Holcomb, Diogo Santos-Martins, Bruce E Torbett, Stefano Forli

Biophys J· January 2025

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CosolvKit: a Versatile Tool for Cosolvent MD Preparation and Analysis.
Niccolo' Bruciaferri, Jerome Eberhardt, Manuel A Llanos, Johannes R Loeffler, Matthew Holcomb

J Chem Inf Model· November 2024

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An mRNA Display Approach for Covalent Targeting of a Virulence Factor.
Sijie Wang, Emily C Woods, Jeyun Jo, Jiyun Zhu, Althea Hansel-Harris, Matthew Holcomb

bioRxiv· November 2024

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Synergy of machine learning and density functional theory calculations for predicting experimental Lewis base affinity and Lewis polybase binding atoms.
Hieu Huynh, Khanh Le, Linh Vu, Trang Nguyen, Matthew Holcomb

J Comput Chem· July 2024

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A multidimensional dataset for structure-based machine learning.
Matthew Holcomb, Stefano Forli

Nat Comput Sci· May 2024

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IP6 and PF74 affect HIV-1 Capsid Stability through Modulation of Hexamer-Hexamer Tilt Angle Preference.
Chris M Garza, Matthew Holcomb, Diogo Santos-Martins, Bruce E Torbett, Stefano Forli

bioRxiv· March 2024

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Reactive Docking: A Computational Method for High-Throughput Virtual Screenings of Reactive Species.
Giulia Bianco, Matthew Holcomb, Diogo Santos-Martins, Andreas Tillack, Althea Hansel-Harris

J Chem Inf Model· September 2023

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Their Word for It: The Inventory of Problems Provides Valuable Information on Both Symptom and Performance Validity.
Matthew Holcomb, Sadie Pyne, Laura Cutler, David A Oikle, Laszlo A Erdodi

J Pers Assess· June 2023

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Ringtail: A Python Tool for Efficient Management and Storage of Virtual Screening Results.
Althea T Hansel-Harris, Diogo Santos-Martins, Niccolò Bruciaferri, Andreas F Tillack, Matthew Holcomb

J Chem Inf Model· April 2023

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Stretching Peptides to Generate Small Molecule β-Strand Mimics.
Zoë C Adams, Anthony P Silvestri, Sorina Chiorean, Dillon T Flood, Brian P Balo, Matthew Holcomb

ACS Cent Sci· April 2023

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Orphan receptor GPR158 serves as a metabotropic glycine receptor: mGlyR.
Thibaut Laboute, Stefano Zucca, Matthew Holcomb, Dipak N Patil, Chris Garza

Science· March 2023

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Evaluation of AlphaFold2 structures as docking targets.
Matthew Holcomb, Ya-Ting Chang, David S Goodsell, Stefano Forli

Protein Sci· January 2023

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Performance evaluation of flexible macrocycle docking in AutoDock.
Matthew Holcomb, Diogo Santos-Martins, Andreas F Tillack, Stefano Forli

QRB Discov· October 2022

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Direct observation of peptide hydrogel self-assembly.
Zoë C Adams, Erika J Olson, Tania L Lopez-Silva, Zhengwen Lian, Audrey Y Kim, Matthew Holcomb

Chem Sci· August 2022

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