Publications by authors named "Matthew Rames"

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Automated machine learning profiling with MAP-HR for quantifying homologous recombination foci in patient samples.
Tugba Y Ozmen, Matthew J Rames, Gabriel M Zangirolani, Furkan Ozmen, Kangjin Jeong

NAR Cancer· September 2025

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Nuclear cGAS mediated replication stress and mitotic catastrophe can overcome gemcitabine resistance.
Soon Young Park, Kang Jin Jeong, Alfonso Poire, Bo Young Jeong, Yuhan Sheng, Matthew J Rames

Cancer Lett· September 2025

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Single-cell RNA sequencing reveals different cellular states in malignant cells and the tumor microenvironment in primary and metastatic ER-positive breast cancer.
Furkan Ozmen, Tugba Y Ozmen, Aysegul Ors, Mahnaz Janghorban, Matthew J Rames

NPJ Breast Cancer· August 2025

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Cyclin E1/CDK2 activation defines a key vulnerability to WEE1 kinase inhibition in gynecological cancers.
Daehwan Kim, Heekyung Chung, Wen Liu, Kangjin Jeong, Tugba Y Ozmen, Matthew J Rames

NPJ Precis Oncol· January 2025

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Multiplexed and Millimeter-Scale Fluorescence Nanoscopy of Cells and Tissue Sections via Prism-Illumination and Microfluidics-Enhanced DNA-PAINT.
Matthew J Rames, John P Kenison, Daniel Heineck, Fehmi Civitci, Malwina Szczepaniak

Chem Biomed Imaging· December 2023

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A phosphoinositide switch mediates exocyst recruitment to multivesicular endosomes for exosome secretion.
Di-Ao Liu, Kai Tao, Bin Wu, Ziyan Yu, Malwina Szczepaniak, Matthew Rames

Nat Commun· October 2023

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Selective enrichment of plasma cell-free messenger RNA in cancer-associated extracellular vesicles.
Hyun Ji Kim, Matthew J Rames, Florian Goncalves, C Ward Kirschbaum, Breeshey Roskams-Hieter

Commun Biol· August 2023

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Nanoscopic Spatial Association between Ras and Phosphatidylserine on the Cell Membrane Studied with Multicolor Super Resolution Microscopy.
Anna M Koester, Kai Tao, Malwina Szczepaniak, Matthew J Rames, Xiaolin Nan

Biomolecules· July 2022

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Irreversible alteration of extracellular vesicle and cell-free messenger RNA profiles in human plasma associated with blood processing and storage.
Hyun Ji Kim, Matthew J Rames, Samuel Tassi Yunga, Randall Armstrong, Mayu Morita

Sci Rep· February 2022

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Author Correction: Fast and multiplexed superresolution imaging with DNA-PAINT-ERS.
Fehmi Civitci, Julia Shangguan, Ting Zheng, Kai Tao, Matthew Rames

Nat Commun· September 2020

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Fast and multiplexed superresolution imaging with DNA-PAINT-ERS.
Fehmi Civitci, Julia Shangguan, Ting Zheng, Kai Tao, Matthew Rames

Nat Commun· August 2020

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Insights into the Tunnel Mechanism of Cholesteryl Ester Transfer Protein through All-atom Molecular Dynamics Simulations.
Dongsheng Lei, Matthew Rames, Xing Zhang, Lei Zhang, Shengli Zhang

J Biol Chem· July 2016

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Fully Mechanically Controlled Automated Electron Microscopic Tomography.
Jinxin Liu, Hongchang Li, Lei Zhang, Matthew Rames, Meng Zhang

Sci Rep· July 2016

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A model of lipid-free apolipoprotein A-I revealed by iterative molecular dynamics simulation.
Xing Zhang, Dongsheng Lei, Lei Zhang, Matthew Rames, Shengli Zhang

PLoS One· February 2016

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Corrigendum: 3D Structural Fluctuation of IgG1 Antibody Revealed by Individual Particle Electron Tomography.
Xing Zhang, Lei Zhang, Huimin Tong, Bo Peng, Matthew J Rames

Sci Rep· January 2016

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Electron Tomography: A Three-Dimensional Analytic Tool for Hard and Soft Materials Research.
Peter Ercius, Osama Alaidi, Matthew J Rames, Gang Ren

Adv Mater· October 2015

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3D Structural Fluctuation of IgG1 Antibody Revealed by Individual Particle Electron Tomography.
Xing Zhang, Lei Zhang, Huimin Tong, Bo Peng, Matthew J Rames

Sci Rep· May 2015

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HDL surface lipids mediate CETP binding as revealed by electron microscopy and molecular dynamics simulation.
Meng Zhang, River Charles, Huimin Tong, Lei Zhang, Mili Patel, Matthew J Rames

Sci Rep· March 2015

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Optimized negative staining: a high-throughput protocol for examining small and asymmetric protein structure by electron microscopy.
Matthew Rames, Yadong Yu, Gang Ren

J Vis Exp· August 2014

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Peptide-conjugation induced conformational changes in human IgG1 observed by optimized negative-staining and individual-particle electron tomography.
Huimin Tong, Lei Zhang, Allan Kaspar, Matthew J Rames, Liqing Huang

Sci Rep· September 2013

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Structural features of cholesteryl ester transfer protein: a molecular dynamics simulation study.
Dongsheng Lei, Xing Zhang, Shengbo Jiang, Zhaodi Cai, Matthew J Rames

Proteins· March 2013

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