Publications by authors named "Matthew Seetin"

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Long-read sequencing across the C9orf72 'GGGGCC' repeat expansion: implications for clinical use and genetic discovery efforts in human disease.
Mark T W Ebbert, Stefan L Farrugia, Jonathon P Sens, Karen Jansen-West, Tania F Gendron, Matthew Seetin

Mol Neurodegener· August 2018

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Improving RNA nearest neighbor parameters for helices by going beyond the two-state model.
Aleksandar Spasic, Kyle D Berger, Jonathan L Chen, Matthew G Seetin, Douglas H Turner

Nucleic Acids Res· June 2018

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Adeno-associated Virus Genome Population Sequencing Achieves Full Vector Genome Resolution and Reveals Human-Vector Chimeras.
Phillip W L Tai, Jun Xie, Kaiyuen Fong, Matthew Seetin, Cheryl Heiner

Mol Ther Methods Clin Dev· June 2018

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The Diversity, Structure, and Function of Heritable Adaptive Immunity Sequences in the Aedes aegypti Genome.
Zachary J Whitfield, Patrick T Dolan, Mark Kunitomi, Michel Tassetto, Matthew G Seetin

Curr Biol· November 2017

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Complete telomere-to-telomere de novo assembly of the Plasmodium falciparum genome through long-read (>11 kb), single molecule, real-time sequencing.
Shruthi Sridhar Vembar, Matthew Seetin, Christine Lambert, Maria Nattestad, Michael C Schatz

DNA Res· August 2016

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DNA methylation on N(6)-adenine in mammalian embryonic stem cells.
Tao P Wu, Tao Wang, Matthew G Seetin, Yongquan Lai, Shijia Zhu

Nature· April 2016

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Massively parallel RNA chemical mapping with a reduced bias MAP-seq protocol.
Matthew G Seetin, Wipapat Kladwang, John P Bida, Rhiju Das

Methods Mol Biol· May 2014

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Modified Amber Force Field Correctly Models the Conformational Preference for Tandem GA pairs in RNA.
Asaminew H Aytenfisu, Aleksandar Spasic, Matthew G Seetin, John Serafini, David H Mathews

J Chem Theory Comput· March 2014

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RNAstructure: Web servers for RNA secondary structure prediction and analysis.
Stanislav Bellaousov, Jessica S Reuter, Matthew G Seetin, David H Mathews

Nucleic Acids Res· July 2013

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RNA structure prediction: an overview of methods.
Matthew G Seetin, David H Mathews

Methods Mol Biol· October 2012

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TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknots.
Matthew G Seetin, David H Mathews

Bioinformatics· March 2012

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Automated RNA tertiary structure prediction from secondary structure and low-resolution restraints.
Matthew G Seetin, David H Mathews

J Comput Chem· July 2011

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