Publications by authors named "Matthew Simon"

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Hospital-onset methicillin-resistant bloodstream infections within tertiary and community hospitals and implications for prevention.
Harjot Kaur Singh, Barbara Ross, Joyce Hannah, Serena Ting, Chloe Teasdale, Matthew Simon

Infect Control Hosp Epidemiol· December 2025

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Investigation of TRMT61B methyltransferase activity on mRNA and its effects on translation.
Dorthy Fang, John M Babich, Ryan Stanton, Isaac W Vock, Kyrillos Abdallah, Matthew D Simon

bioRxiv· December 2025

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MYOD represses gene expression from non-E-box motifs.
Chiara Nicoletti, Jimmy Massenet, Andreas P Pintado-Urbanc, Leah J Connor, Monica Nicolau, Matthew D Simon

Genes Dev· November 2025

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Retrospective Evaluation of the Diagnostic Performance and Safety of a Reflex Urine Culture Algorithm in Pediatrics.
Karen P Acker, Xiaoyue Ma, Hannah Joyce, WooJin Shin, David Kuang, Matthew S Simon

J Pediatric Infect Dis Soc· November 2025

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RBM15-MKL1 fusion protein promotes leukemia via m6A methylation and Wnt pathway activation.
Madeline Y Mayday, Giulia Biancon, Manyi Wei, Christian Ramirez, Irene Moratti, Matthew D Simon

Blood· August 2025

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Mobile monitoring of air pollution - a position paper on use cases, good practices, challenges, and opportunities.
Jules Kerckhoffs, Jelle Hofman, Jibran Khan, Matthew D Adams, Magali N Blanco, Matthew C Simon

Environ Int· August 2025

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Transferrin receptor-mediated transport at the blood-brain barrier is elevated during early development and maintained across aging and in an Alzheimer's mouse model.
Vanessa O Torres, Michelle E Pizzo, Darren Chan, Jason C Dugas, David Huynh, Matthew J Simon

J Cereb Blood Flow Metab· August 2025

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RNADecayCafe, a uniformly processed atlas of RNA half-life estimates across multiple human cell lines.
Isaac W Vock, Dié Tang, Antonio J Giraldez, Matthew D Simon

bioRxiv· August 2025

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Expanding and improving analyses of nucleotide recoding RNA-seq experiments with the EZbakR suite.
Isaac W Vock, Justin W Mabin, Martin Machyna, Alexandra Zhang, J Robert Hogg, Matthew D Simon

PLoS Comput Biol· July 2025

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Impact of inter-hospital transfers and admissions to transfer hubs on outcomes of cardiac implantable electronic device-associated infective endocarditis.
Ilya Kim, Ari G Mandler, Christopher T Sciria, Edward V Kogan, Ilhwan Yeo, Matthew Simon

Heart Rhythm· July 2025

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Transcription elongation factor ELOF1 is required for efficient somatic hypermutation and class switch recombination.
Lizhen Wu, Anurupa Devi Yadavalli, Filip Senigl, Gabriel Matos-Rodrigues, Dijin Xu, Matthew D Simon

Mol Cell· April 2025

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Rapid folding of nascent RNA regulates eukaryotic RNA biogenesis.
Leonard Schärfen, Isaac W Vock, Matthew D Simon, Karla M Neugebauer

Mol Cell· April 2025

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Uncovering the isoform-resolution kinetic landscape of nonsense-mediated mRNA decay with EZbakR.
Justin W Mabin, Isaac W Vock, Martin Machyna, Nazmul Haque, Poonam Thakran, Matthew D Simon

bioRxiv· March 2025

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Fc-engineered large molecules targeting blood-brain barrier transferrin receptor and CD98hc have distinct central nervous system and peripheral biodistribution.
Nathalie Khoury, Michelle E Pizzo, Claire B Discenza, David Joy, David Tatarakis, Matthew J Simon

Nat Commun· February 2025

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RBM15-MKL1 fusion protein promotes leukemia via m6A methylation and WNT pathway activation.
Madeline Y Mayday, Giulia Biancon, Manyi Wei, Christian Ramirez, Irene Moratti, Matthew D Simon

bioRxiv· February 2025

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E-box independent chromatin recruitment turns MYOD into a transcriptional repressor.
Chiara Nicoletti, Jimmy Massenet, Andreas P Pintado-Urbanc, Leah J Connor, Monica Nicolau, Matthew D Simon

bioRxiv· December 2024

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Impact of hospital lead extraction volume on management of cardiac implantable electronic device-associated infective endocarditis.
Ari G Mandler, Christopher T Sciria, Edward V Kogan, Ilya Kim, Ilhwan Yeo, Matthew S Simon

Europace· December 2024

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Rapid folding of nascent RNA regulates eukaryotic RNA biogenesis.
Leonard Schärfen, Isaac W Vock, Matthew D Simon, Karla M Neugebauer

bioRxiv· November 2024

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cGAS deficient mice display premature aging associated with de-repression of LINE1 elements and inflammation.
John C Martinez, Francesco Morandini, Lucinda Fitzgibbons, Natasha Sieczkiewicz, Sung Jae Bae, Matthew Simon

bioRxiv· October 2024

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Expanding and improving analyses of nucleotide recoding RNA-seq experiments with the EZbakR suite.
Isaac W Vock, Justin W Mabin, Martin Machyna, Alexandra Zhang, J Robert Hogg, Matthew D Simon

bioRxiv· October 2024

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Phosphorylation of the nuclear poly(A) binding protein (PABPN1) during mitosis protects mRNA from hyperadenylation and maintains transcriptome dynamics.
Jackson M Gordon, David V Phizicky, Leonard Schärfen, Courtney L Brown, Dahyana Arias Escayola, Matthew D Simon

Nucleic Acids Res· September 2024

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Disulfide Tethering to Map Small Molecule Binding Sites Transcriptome-wide.
Michelle H Moon, Isaac W Vock, Andrew D Streit, Leah J Connor, Julia Senkina, Matthew D Simon

ACS Chem Biol· September 2024

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Transcription elongation factor ELOF1 is required for efficient somatic hypermutation and class switch recombination.
Lizhen Wu, Anurupa Devi Yadavalli, Gabriel Matos-Rodrigues, Dijin Xu, Andreas P Pintado-Urbanc, Matthew D Simon

bioRxiv· September 2024

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Targeting the transferrin receptor to transport antisense oligonucleotides across the mammalian blood-brain barrier.
Scarlett J Barker, Mai B Thayer, Chaeyoung Kim, David Tatarakis, Matthew J Simon

Sci Transl Med· August 2024

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Aquaporin-4 mis-localization slows glymphatic clearance of α-synuclein and promotes α-synuclein pathology and aggregate propagation.
Molly Braun, Matthew J Simon, Jay Jang, Keith Sanderson, Justyna Swierz

bioRxiv· August 2024

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