Publications by authors named "Matthias Samwald"

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Pharmacogenetic Implementation Studies-Lessons Learned From the PREPARE Study.
Henk-Jan Guchelaar, Cathelijne H van der Wouden, Lisanne E N Manson, Heshu Abdullah-Koolmees, Kathrin Blagec, Matthias Samwald

Clin Pharmacol Ther· October 2025

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Medical triage as an AI ethics benchmark.
Nathalie Maria Kirch, Konstantin Hebenstreit, Matthias Samwald

Sci Rep· August 2025

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GPT-4 as a biomedical simulator.
Moritz Schaefer, Stephan Reichl, Rob Ter Horst, Adele M Nicolas, Thomas Krausgruber, Matthias Samwald

Comput Biol Med· August 2024

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A comparison of chain-of-thought reasoning strategies across datasets and models.
Konstantin Hebenstreit, Robert Praas, Louis P Kiesewetter, Matthias Samwald

PeerJ Comput Sci· April 2024

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ThoughtSource: A central hub for large language model reasoning data.
Simon Ott, Konstantin Hebenstreit, Valentin Liévin, Christoffer Egeberg Hother, Milad Moradi, Matthias Samwald

Sci Data· August 2023

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A 12-gene pharmacogenetic panel to prevent adverse drug reactions: an open-label, multicentre, controlled, cluster-randomised crossover implementation study.
Jesse J Swen, Cathelijne H van der Wouden, Lisanne En Manson, Heshu Abdullah-Koolmees, Kathrin Blagec, Matthias Samwald

Lancet· February 2023

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Benchmark datasets driving artificial intelligence development fail to capture the needs of medical professionals.
Kathrin Blagec, Jakob Kraiger, Wolfgang Frühwirt, Matthias Samwald

J Biomed Inform· January 2023

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Mapping global dynamics of benchmark creation and saturation in artificial intelligence.
Simon Ott, Adriano Barbosa-Silva, Kathrin Blagec, Jan Brauner, Matthias Samwald

Nat Commun· November 2022

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Relational local electroencephalography representations for sleep scoring.
Georg Brandmayr, Manfred Hartmann, Franz Fürbass, Gerald Matz, Matthias Samwald

Neural Netw· October 2022

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Improving the robustness and accuracy of biomedical language models through adversarial training.
Milad Moradi, Matthias Samwald

J Biomed Inform· August 2022

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Pharmacogenomics decision support in the U-PGx project: Results and advice from clinical implementation across seven European countries.
Kathrin Blagec, Jesse J Swen, Rudolf Koopmann, Ka-Chun Cheung, Mandy Crommentuijn-van Rhenen, Matthias Samwald

PLoS One· June 2022

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A curated, ontology-based, large-scale knowledge graph of artificial intelligence tasks and benchmarks.
Kathrin Blagec, Adriano Barbosa-Silva, Simon Ott, Matthias Samwald

Sci Data· June 2022

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LinkExplorer: predicting, explaining and exploring links in large biomedical knowledge graphs.
Simon Ott, Adriano Barbosa-Silva, Matthias Samwald

Bioinformatics· April 2022

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The roles of predictors in cardiovascular risk models - a question of modeling culture?
Christine Wallisch, Asan Agibetov, Daniela Dunkler, Maria Haller, Matthias Samwald

BMC Med Res Methodol· December 2021

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Convolutional Neural Networks for Fully Automated Diagnosis of Cardiac Amyloidosis by Cardiac Magnetic Resonance Imaging.
Asan Agibetov, Andreas Kammerlander, Franz Duca, Christian Nitsche, Matthias Koschutnik, Matthias Samwald

J Pers Med· December 2021

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Explaining Black-Box Models for Biomedical Text Classification.
Milad Moradi, Matthias Samwald

IEEE J Biomed Health Inform· August 2021

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Generating evidence for precision medicine: considerations made by the Ubiquitous Pharmacogenomics Consortium when designing and operationalizing the PREPARE study.
Cathelijne H van der Wouden, Stefan Böhringer, Erika Cecchin, Ka-Chun Cheung, Cristina Lucía Dávila-Fajardo, Matthias Samwald

Pharmacogenet Genomics· August 2020

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OpenBioLink: a benchmarking framework for large-scale biomedical link prediction.
Anna Breit, Simon Ott, Asan Agibetov, Matthias Samwald

Bioinformatics· July 2020

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Summarization of biomedical articles using domain-specific word embeddings and graph ranking.
Milad Moradi, Maedeh Dashti, Matthias Samwald

J Biomed Inform· July 2020

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Machine Learning Enables Prediction of Cardiac Amyloidosis by Routine Laboratory Parameters: A Proof-of-Concept Study.
Asan Agibetov, Benjamin Seirer, Theresa-Marie Dachs, Matthias Koschutnik, Daniel Dalos, Matthias Samwald

J Clin Med· May 2020

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Deep contextualized embeddings for quantifying the informative content in biomedical text summarization.
Milad Moradi, Georg Dorffner, Matthias Samwald

Comput Methods Programs Biomed· February 2020

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Neural sentence embedding models for semantic similarity estimation in the biomedical domain.
Kathrin Blagec, Hong Xu, Asan Agibetov, Matthias Samwald

BMC Bioinformatics· April 2019

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Fast and scalable neural embedding models for biomedical sentence classification.
Asan Agibetov, Kathrin Blagec, Hong Xu, Matthias Samwald

BMC Bioinformatics· December 2018

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Implementing pharmacogenomics decision support across seven European countries: The Ubiquitous Pharmacogenomics (U-PGx) project.
Kathrin Blagec, Rudolf Koopmann, Mandy Crommentuijn-van Rhenen, Inge Holsappel, Cathelijne H van der Wouden, Matthias Samwald

J Am Med Inform Assoc· July 2018

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Effects of Medical Device Regulations on the Development of Stand-Alone Medical Software: A Pilot Study.
Kathrin Blagec, David Jungwirth, Daniela Haluza, Matthias Samwald

Stud Health Technol Inform· June 2018

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