Publications by authors named "Matthieu Defrance"

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Identification of novel type 1 and type 2 diabetes genes by co-localization of human islet eQTL and GWAS variants with colocRedRibbon.
Anthony Piron, Florian Szymczak, Lise Folon, Daniel J M Crouch, Theodora Papadopoulou, Matthieu Defrance

Cell Genom· November 2025

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Effects of light regimes on circadian gene co-expression networks in .
Quentin Rivière, Virginie Raskin, Romário de Melo, Stéphanie Boutet, Massimiliano Corso, Matthieu Defrance

Plant Direct· August 2024

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RedRibbon: A new rank-rank hypergeometric overlap for gene and transcript expression signatures.
Anthony Piron, Florian Szymczak, Theodora Papadopoulou, Maria Inês Alvelos, Matthieu Defrance

Life Sci Alliance· February 2024

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Comprehensive evaluation of the implementation of episignatures for diagnosis of neurodevelopmental disorders (NDDs).
Edoardo Giuili, Robin Grolaux, Catarina Z N M Macedo, Laurence Desmyter, Bruno Pichon, Matthieu Defrance

Hum Genet· December 2023

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USP7/Maged1-mediated H2A monoubiquitination in the paraventricular thalamus: an epigenetic mechanism involved in cocaine use disorder.
Julian Cheron, Leonardo Beccari, Perrine Hagué, Romain Icick, Chloé Despontin, Matthieu Defrance

Nat Commun· December 2023

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Facing lethal temperatures: Heat-shock response in desert and temperate ants.
Natalia de Souza Araujo, Rémy Perez, Quentin Willot, Matthieu Defrance, Serge Aron

Ecol Evol· September 2023

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Correction: Retinal endothelial cell phenotypic modifications during experimental autoimmune uveitis: a transcriptomic approach.
Deborah A Lipski, Vincent Foucart, Rémi Dewispelaere, Laure E Caspers, Matthieu Defrance

BMC Ophthalmol· March 2023

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DNA Modification Patterns Filtering and Analysis Using DNAModAnnot.
Alexis Hardy, Sandra Duharcourt, Matthieu Defrance

Methods Mol Biol· February 2023

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Improving Infinium MethylationEPIC data processing: re-annotation of enhancers and long noncoding RNA genes and benchmarking of normalization methods.
Martin Bizet, Matthieu Defrance, Emilie Calonne, Gianluca Bontempi, Christos Sotiriou

Epigenetics· December 2022

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Identification of differentially methylated regions in rare diseases from a single-patient perspective.
Robin Grolaux, Alexis Hardy, Catharina Olsen, Sonia Van Dooren, Guillaume Smits, Matthieu Defrance

Clin Epigenetics· December 2022

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Exploiting Genomic Features to Improve the Prediction of Transcription Factor-Binding Sites in Plants.
Quentin Rivière, Massimiliano Corso, Madalina Ciortan, Grégoire Noël, Nathalie Verbruggen, Matthieu Defrance

Plant Cell Physiol· October 2022

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GNN-based embedding for clustering scRNA-seq data.
Madalina Ciortan, Matthieu Defrance

Bioinformatics· January 2022

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Molecular adaptations to heat stress in the thermophilic ant genus Cataglyphis.
Rémy Perez, Natalia de Souza Araujo, Matthieu Defrance, Serge Aron

Mol Ecol· November 2021

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TIGER: The gene expression regulatory variation landscape of human pancreatic islets.
Lorena Alonso, Anthony Piron, Ignasi Morán, Marta Guindo-Martínez, Sílvia Bonàs-Guarch, Matthieu Defrance

Cell Rep· October 2021

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DNAModAnnot: a R toolbox for DNA modification filtering and annotation.
Alexis Hardy, Mélody Matelot, Amandine Touzeau, Christophe Klopp, Céline Lopez-Roques, Matthieu Defrance

Bioinformatics· September 2021

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Contrastive self-supervised clustering of scRNA-seq data.
Madalina Ciortan, Matthieu Defrance

BMC Bioinformatics· May 2021

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Combining single-cell RNA-sequencing with a molecular atlas unveils new markers for Caenorhabditis elegans neuron classes.
Ramiro Lorenzo, Michiho Onizuka, Matthieu Defrance, Patrick Laurent

Nucleic Acids Res· July 2020

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Retinal endothelial cell phenotypic modifications during experimental autoimmune uveitis: a transcriptomic approach.
Deborah A Lipski, Vincent Foucart, Rémi Dewispelaere, Laure E Caspers, Matthieu Defrance

BMC Ophthalmol· March 2020

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EOMES interacts with RUNX3 and BRG1 to promote innate memory cell formation through epigenetic reprogramming.
Nicolas Istaces, Marion Splittgerber, Viviana Lima Silva, Muriel Nguyen, Séverine Thomas, Matthieu Defrance

Nat Commun· July 2019

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Distinct mesoderm migration phenotypes in extra-embryonic and embryonic regions of the early mouse embryo.
Bechara Saykali, Navrita Mathiah, Wallis Nahaboo, Marie-Lucie Racu, Latifa Hammou, Matthieu Defrance

Elife· April 2019

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Molecular chaperoning helps safeguarding mitochondrial integrity and motor functions in the Sahara silver ant Cataglyphis bombycina.
Quentin Willot, Patrick Mardulyn, Matthieu Defrance, Cyril Gueydan, Serge Aron

Sci Rep· June 2018

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Changes in chromatin state reveal ARNT2 at a node of a tumorigenic transcription factor signature driving glioblastoma cell aggressiveness.
Alexandra Bogeas, Ghislaine Morvan-Dubois, Elias A El-Habr, François-Xavier Lejeune, Matthieu Defrance

Acta Neuropathol· February 2018

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The transcription factors Runx3 and ThPOK cross-regulate acquisition of cytotoxic function by human Th1 lymphocytes.
Yasmina Serroukh, Chunyan Gu-Trantien, Baharak Hooshiar Kashani, Matthieu Defrance, Thien-Phong Vu Manh

Elife· February 2018

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DNA methylation-based immune response signature improves patient diagnosis in multiple cancers.
Jana Jeschke, Martin Bizet, Christine Desmedt, Emilie Calonne, Sarah Dedeurwaerder, Matthieu Defrance

J Clin Invest· August 2017

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MHC class II expression and potential antigen-presenting cells in the retina during experimental autoimmune uveitis.
Deborah A Lipski, Rémi Dewispelaere, Vincent Foucart, Laure E Caspers, Matthieu Defrance

J Neuroinflammation· July 2017

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