Publications by authors named "Matthieu Vignes"

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MOTL: enhancing multi-omics matrix factorization with transfer learning.
David P Hirst, Morgane Térézol, Laura Cantini, Paul Villoutreix, Matthieu Vignes

Genome Biol· July 2025

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Protein Intake and Protein Quality Patterns in New Zealand Vegan Diets: An Observational Analysis Using Dynamic Time Warping.
Bi Xue Patricia Soh, Matthieu Vignes, Nick W Smith, Pamela R von Hurst, Warren C McNabb

Nutrients· May 2025

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Evaluation of protein intake and protein quality in New Zealand vegans.
Bi Xue Patricia Soh, Matthieu Vignes, Nick W Smith, Pamela R von Hurst, Warren C McNabb

PLoS One· April 2025

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Factors predicting parenting stress in the autism spectrum disorder context: A network analysis approach.
Khan Buchwald, Daniel Shepherd, Richard J Siegert, Matthieu Vignes, Jason Landon

PLoS One· April 2025

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Using network analysis to identify factors influencing the heath-related quality of life of parents caring for an autistic child.
Daniel Shepherd, Khan Buchwald, Richard J Siegert, Matthieu Vignes

Res Dev Disabil· September 2024

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Visual Integration of Genome-Wide Association Studies and Differential Expression Results with the Hidecan R Package.
Olivia Angelin-Bonnet, Matthieu Vignes, Patrick J Biggs, Samantha Baldwin, Susan Thomson

Genes (Basel)· September 2024

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Centrality statistics of symptom networks of schizophrenia: a systematic review.
Khan Buchwald, Ajit Narayanan, Richard John Siegert, Matthieu Vignes, Kim Arrowsmith

Psychol Med· April 2024

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A novel Bayesian Latent Class Model (BLCM) evaluates multiple continuous and binary tests: A case study for Brucella abortus in dairy cattle.
Yu Wang, Emilie Vallée, Chris Compton, Cord Heuer, Aizhen Guo, Matthieu Vignes

Prev Vet Med· March 2024

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Infrared Spectroscopy of Synovial Fluid Shows Accuracy as an Early Biomarker in an Equine Model of Traumatic Osteoarthritis.
Luca Panizzi, Matthieu Vignes, Keren E Dittmer, Mark R Waterland, Chris W Rogers

Animals (Basel)· March 2024

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Investigating the genetic components of tuber bruising in a breeding population of tetraploid potatoes.
Olivia Angelin-Bonnet, Susan Thomson, Matthieu Vignes, Patrick J Biggs, Katrina Monaghan

BMC Plant Biol· May 2023

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Evaluation of the accuracy of the IDvet serological test for Mycoplasma bovis infection in cattle using latent class analysis of paired serum ELISA and quantitative real-time PCR on tonsillar swabs sampled at slaughter.
Nelly Marquetoux, Matthieu Vignes, Amy Burroughs, Emma Sumner, Kate Sawford

PLoS One· May 2023

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Plasma and Synovial Fluid Cell-Free DNA Concentrations Following Induction of Osteoarthritis in Horses.
Luca Panizzi, Keren E Dittmer, Matthieu Vignes, Jennie S Doucet, Kristene Gedye

Animals (Basel)· March 2023

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The African swine fever modelling challenge: Model comparison and lessons learnt.
Pauline Ezanno, Sébastien Picault, Servane Bareille, Gaël Beaunée, Gert Jan Boender, Matthieu Vignes

Epidemics· September 2022

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A multi-objective genetic algorithm to find active modules in multiplex biological networks.
Elva María Novoa-Del-Toro, Efrén Mezura-Montes, Matthieu Vignes, Morgane Térézol, Frédérique Magdinier

PLoS Comput Biol· August 2021

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Identifying Health Status in Grazing Dairy Cows from Milk Mid-Infrared Spectroscopy by Using Machine Learning Methods.
Brenda Contla Hernández, Nicolas Lopez-Villalobos, Matthieu Vignes

Animals (Basel)· July 2021

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sismonr: simulation of in silico multi-omic networks with adjustable ploidy and post-transcriptional regulation in R.
Olivia Angelin-Bonnet, Patrick J Biggs, Samantha Baldwin, Susan Thomson, Matthieu Vignes

Bioinformatics· May 2020

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Causal Queries from Observational Data in Biological Systems via Bayesian Networks: An Empirical Study in Small Networks.
Alex White, Matthieu Vignes

Methods Mol Biol· June 2019

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Gene Regulatory Networks: A Primer in Biological Processes and Statistical Modelling.
Olivia Angelin-Bonnet, Patrick J Biggs, Matthieu Vignes

Methods Mol Biol· June 2019

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Bridging physiological and evolutionary time-scales in a gene regulatory network.
Gwenaëlle Marchand, Vân Anh Huynh-Thu, Nolan C Kane, Sandrine Arribat, Didier Varès, Matthieu Vignes

New Phytol· July 2014

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An algorithm for the simulation of the growth of root systems on deformable domains.
Lionel Xavier Dupuy, Matthieu Vignes

J Theor Biol· October 2012

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Gene regulatory network reconstruction using Bayesian networks, the Dantzig Selector, the Lasso and their meta-analysis.
Matthieu Vignes, Jimmy Vandel, David Allouche, Nidal Ramadan-Alban, Christine Cierco-Ayrolles

PLoS One· May 2012

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SpaCEM3: a software for biological module detection when data is incomplete, high dimensional and dependent.
Matthieu Vignes, Juliette Blanchet, Damien Leroux, Florence Forbes

Bioinformatics· March 2011

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Gene clustering via integrated Markov models combining individual and pairwise features.
Matthieu Vignes, Florence Forbes

IEEE/ACM Trans Comput Biol Bioinform· August 2009

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A model-based approach to gene clustering with missing observation reconstruction in a Markov random field framework.
Juliette Blanchet, Matthieu Vignes

J Comput Biol· March 2009

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