Publications by authors named "Mauro A A Castro"

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Identification of Epigenetic Regulatory Networks of Gene Methylation-miRNA-Transcription Factor Feed-Forward Loops in Basal-like Breast Cancer.
Larissa M Okano, Alexandre L K de Azevedo, Tamyres M Carvalho, Jean Resende, Jessica M Magno, Mauro A A Castro

Cells· August 2025

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Protocol for assessing distances in pathway space for classifier feature sets from machine learning methods.
Bahar Tercan, Victor H Apolonio, Vinicius S Chagas, Christopher K Wong, Jordan A Lee, Mauro A A Castro

STAR Protoc· June 2025

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Protocol for obtaining cancer type and subtype predictions using subSCOPE.
Jasleen K Grewal, A Gordon Robertson, Kyle Ellrott, Christopher K Wong, Jordan A Lee, Mauro A A Castro

STAR Protoc· June 2025

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Steroidogenic factor-1 regulates a core set of target genes to promote malignancy in adrenocortical carcinoma.
João C D Muzzi, Carmen Ruggiero, Mabrouka Doghman-Bouguerra, Maísa E Colodel, Jessica M Magno, Mauro A A Castro

Eur J Endocrinol· June 2025

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Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets.
Kyle Ellrott, Christopher K Wong, Christina Yau, Mauro A A Castro, Jordan A Lee

Cancer Cell· February 2025

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Single-cell chromatin accessibility reveals malignant regulatory programs in primary human cancers.
Laksshman Sundaram, Arvind Kumar, Matthew Zatzman, Adriana Salcedo, Neal Ravindra, Mauro A A Castro

Science· September 2024

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Bridge: A New Algorithm for Rooting Orthologous Genes in Large-Scale Evolutionary Analyses.
Leonardo R S Campos, Sheyla Trefflich, Diego A A Morais, Danilo O Imparato, Vinicius S Chagas, Mauro A A Castro

Mol Biol Evol· February 2024

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Sertraline as a potential cancer therapeutic approach: Biological relevance of TCTP in breast cancer cell lines and tumors.
Antonielle B Baldissera, Marianna Boia-Ferreira, Alana B C Basílio, Jean Silva de Souza Resende, Mauro Antônio Alves Castro

Adv Med Sci· September 2023

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PD-1/PD-L1 Inhibitors Response in Triple-Negative Breast Cancer: Can Long Noncoding RNAs Be Associated?
Carolina Mathias, Vanessa Nascimento Kozak, Jessica Maria Magno, Suelen Cristina Soares Baal, Victor Henrique Apolonio Dos Santos, Mauro Antonio Alves Castro

Cancers (Basel)· September 2023

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spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape.
Fabio Boniolo, Markus Hoffmann, Norman Roggendorf, Bahar Tercan, Jan Baumbach, Mauro A A Castro

Bioinformatics· May 2023

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Expression-based subtypes define pathologic response to neoadjuvant immune-checkpoint inhibitors in muscle-invasive bladder cancer.
A Gordon Robertson, Khyati Meghani, Lauren Folgosa Cooley, Kimberly A McLaughlin, Leigh Ann Fall, Mauro A A Castro

Nat Commun· April 2023

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Author Correction: FOXA1 repression drives lineage plasticity and immune heterogeneity in bladder cancers with squamous differentiation.
Joshua I Warrick, Wenhuo Hu, Hironobu Yamashita, Vonn Walter, Lauren Shuman, Mauro A A Castro

Nat Commun· December 2022

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FOXA1 repression drives lineage plasticity and immune heterogeneity in bladder cancers with squamous differentiation.
Joshua I Warrick, Wenhuo Hu, Hironobu Yamashita, Vonn Walter, Lauren Shuman, Mauro A A Castro

Nat Commun· November 2022

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A transcriptional network of cell cycle dysregulation in noninvasive papillary urothelial carcinoma.
Joshua I Warrick, Margaret A Knowles, Carolyn D Hurst, Lauren Shuman, Jay D Raman, Mauro A A Castro

Sci Rep· October 2022

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Comprehensive Characterization of the Regulatory Landscape of Adrenocortical Carcinoma: Novel Transcription Factors and Targets Associated with Prognosis.
João C D Muzzi, Jéssica M Magno, Jean S Souza, Larissa M Alvarenga, Juliana F de Moura, Mauro A A Castro

Cancers (Basel)· October 2022

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Corrigendum to "Identification of Differential Tumor Subtypes of T1 Bladder Cancer" [Eur. Urol. 78 (2020) 533-537].
A Gordon Robertson, Clarice S Groeneveld, Brian Jordan, Xiaoqi Lin, Kimberly A McLaughlin, Mauro A A Castro

Eur Urol· February 2022

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TreeAndLeaf: an R/Bioconductor package for graphs and trees with focus on the leaves.
Milena A Cardoso, Luis E A Rizzardi, Leonardo W Kume, Clarice S Groeneveld, Sheyla Trefflich, Mauro A A Castro

Bioinformatics· February 2022

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Adrenocortical Carcinoma Steroid Profiles: Pan-Cancer Analysis of TCGA Data Uncovers Immunotherapy Targets for Potential Improved Outcomes.
João C D Muzzi, Jessica M Magno, Milena A Cardoso, Juliana de Moura, Mauro A A Castro

Front Endocrinol (Lausanne)· December 2021

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Stage-stratified molecular profiling of non-muscle-invasive bladder cancer enhances biological, clinical, and therapeutic insight.
Carolyn D Hurst, Guo Cheng, Fiona M Platt, Mauro A A Castro, Nour-Al-Dain S Marzouka

Cell Rep Med· December 2021

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Dysregulation of Transcription Factor Networks Unveils Different Pathways in Human Papillomavirus 16-Positive Squamous Cell Carcinoma and Adenocarcinoma of the Uterine Cervix.
Saloe Bispo, Ticiana D J Farias, Patricia Savio de Araujo-Souza, Ricardo Cintra, Hellen Geremias Dos Santos, Mauro Antônio Alves Castro

Front Oncol· May 2021

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Unraveling Immune-Related lncRNAs in Breast Cancer Molecular Subtypes.
Carolina Mathias, João Carlos Degraf Muzzi, Bruna Borba Antunes, Daniela F Gradia, Mauro A A Castro

Front Oncol· May 2021

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Whole-genome characterization of lung adenocarcinomas lacking the RTK/RAS/RAF pathway.
Jian Carrot-Zhang, Xiaotong Yao, Siddhartha Devarakonda, Aditya Deshpande, Jeffrey S Damrauer, Mauro A A Castro

Cell Rep· February 2021

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Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway.
Jian Carrot-Zhang, Xiaotong Yao, Siddhartha Devarakonda, Aditya Deshpande, Jeffrey S Damrauer, Mauro A A Castro

Cell Rep· February 2021

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Novel lncRNAs Co-Expression Networks Identifies LINC00504 with Oncogenic Role in Luminal A Breast Cancer Cells.
Carolina Mathias, Clarice S Groeneveld, Sheyla Trefflich, Erika P Zambalde, Rubens S Lima, Mauro A A Castro

Int J Mol Sci· February 2021

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AKT3 Expression in Mesenchymal Colorectal Cancer Cells Drives Growth and Is Associated with Epithelial-Mesenchymal Transition.
Joyce Y Buikhuisen, Patricia M Gomez Barila, Arezo Torang, Daniëlle Dekker, Joan H de Jong, Mauro A A Castro

Cancers (Basel)· February 2021

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