Publications by authors named "Maxim Dudnikov"

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Cost-Effective Detection of SNPs and Structural Variations in Full-Length Genes of Wheat and Sunflower Using Multiplex PCR and Rapid Nanopore Kit.
Ekaterina Polkhovskaya, Evgeniy Moskalev, Pavel Merkulov, Ksenia Dudnikova, Maxim Dudnikov

Biology (Basel)· January 2025

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Cas9-targeted Nanopore sequencing rapidly elucidates the transposition preferences and DNA methylation profiles of mobile elements in plants.
Pavel Merkulov, Sofya Gvaramiya, Maxim Dudnikov, Roman Komakhin, Murad Omarov

J Integr Plant Biol· October 2023

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Epigenetic Stress and Long-Read cDNA Sequencing of Sunflower ( L.) Revealed the Origin of the Plant Retrotranscriptome.
Ilya Kirov, Pavel Merkulov, Ekaterina Polkhovskaya, Zakhar Konstantinov, Mikhail Kazancev, Maxim Dudnikov

Plants (Basel)· December 2022

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A Pipeline NanoTRF as a New Tool for Satellite DNA Identification in the Raw Nanopore Sequencing Reads of Plant Genomes.
Ilya Kirov, Elizaveta Kolganova, Maxim Dudnikov, Olga Yu Yurkevich, Alexandra V Amosova

Plants (Basel)· August 2022

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Transposons Hidden in Genome Assembly Gaps and Mobilization of Non-Autonomous LTR Retrotransposons Unravelled by Nanotei Pipeline.
Ilya Kirov, Pavel Merkulov, Maxim Dudnikov, Ekaterina Polkhovskaya, Roman A Komakhin

Plants (Basel)· December 2021

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Searching for a Needle in a Haystack: Cas9-Targeted Nanopore Sequencing and DNA Methylation Profiling of Full-Length Glutenin Genes in a Big Cereal Genome.
Ilya Kirov, Ekaterina Polkhovskaya, Maxim Dudnikov, Pavel Merkulov, Anastasia Vlasova

Plants (Basel)· December 2021

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Genomic and Transcriptomic Survey Provides New Insight into the Organization and Transposition Activity of Highly Expressed LTR Retrotransposons of Sunflower ( L.).
Ilya Kirov, Murad Omarov, Pavel Merkulov, Maxim Dudnikov, Sofya Gvaramiya

Int J Mol Sci· December 2020

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Nanopore RNA Sequencing Revealed Long Non-Coding and LTR Retrotransposon-Related RNAs Expressed at Early Stages of Triticale SEED Development.
Ilya Kirov, Maxim Dudnikov, Pavel Merkulov, Andrey Shingaliev, Murad Omarov

Plants (Basel)· December 2020

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Functional Centromeres Comprise Arrays of a Long Satellite Repeat, Insertions of Retrotransposons and Chloroplast DNA.
Ilya Kirov, Sergey Odintsov, Murad Omarov, Sofya Gvaramiya, Pavel Merkulov, Maxim Dudnikov

Front Plant Sci· October 2020

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