Publications by authors named "Maya Topf"

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Drug targeting of protein-nucleic acid interactions.
Luca R Genz, Sanjana Nair, Aaron Sweeney, Maya Topf

Curr Opin Struct Biol· December 2025

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Cryo-EM Analysis in CASP16.
Thomas Mulvaney, Andriy Kryshtafovych, Maya Topf

Proteins· December 2025

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Assessing scoring metrics for AlphaFold2 and AlphaFold3 protein complex predictions.
Luca R Genz, Sanjana Nair, Natan Nagar, Maya Topf

Protein Sci· November 2025

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Progress and Bottlenecks for Deep Learning in Computational Structure Biology: CASP Round XVI.
Andriy Kryshtafovych, Torsten Schwede, Maya Topf, Krzysztof Fidelis, John Moult

Proteins· November 2025

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Dynamic assembly of a large multidomain ribozyme visualized by cryo-electron microscopy.
Shekhar Jadhav, Mauro Maiorca, Jacopo Manigrasso, Spandan Saha, Auriane Rakitch, Maya Topf

Nat Commun· November 2025

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A nanobody specific to prefusion glycoprotein B neutralizes HSV-1 and HSV-2.
Benjamin Vollmer, Henriette Ebel, Renate Rees, Julia Nentwig, Thomas Mulvaney, Maya Topf

Nature· October 2025

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Protein Target Highlights in CASP16: Insights From the Structure Providers.
Leila T Alexander, Océane M Follonier, Andriy Kryshtafovych, Kim Abesamis, Sabrina Bibi-Triki, Maya Topf

Proteins· October 2025

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-related disorders: expansion of the phenotypic spectrum and long-term efficacy of deep brain stimulation.
Laura Cif, Diane Demailly, Jean-Pierre Lin, Katy E Barwick, Mario Sa, Maya Topf

ArXiv· February 2025

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Key Proteins for Regeneration in : Transcriptomic Insights From Aged and Juvenile Limbs.
Aylin Del Moral-Morales, Cynthia Sámano, José Antonio Ocampo-Cervantes, Maya Topf, Jan Baumbach

Scientifica (Cairo)· November 2024

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Modeling Flexible Protein Structure With AlphaFold2 and Crosslinking Mass Spectrometry.
Karen Manalastas-Cantos, Kish R Adoni, Matthias Pfeifer, Birgit Märtens, Kay Grünewald, Maya Topf

Mol Cell Proteomics· March 2024

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Community recommendations on cryoEM data archiving and validation.
Gerard J Kleywegt, Paul D Adams, Sarah J Butcher, Catherine L Lawson, Alexis Rohou, Maya Topf

IUCrJ· March 2024

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Community recommendations on cryoEM data archiving and validation: Outcomes of a wwPDB/EMDB workshop on cryoEM data management, deposition and validation.
Gerard J Kleywegt, Paul D Adams, Sarah J Butcher, Catherine L Lawson, Alexis Rohou, Maya Topf

ArXiv· February 2024

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ChemEM: Flexible Docking of Small Molecules in Cryo-EM Structures.
Aaron Sweeney, Thomas Mulvaney, Mauro Maiorca, Maya Topf

J Med Chem· January 2024

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Cryo-EM structure and B-factor refinement with ensemble representation.
Joseph G Beton, Thomas Mulvaney, Tristan Cragnolini, Maya Topf

Nat Commun· January 2024

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New prediction categories in CASP15.
Andriy Kryshtafovych, Maciej Antczak, Marta Szachniuk, Tomasz Zok, Rachael C Kretsch, Maya Topf

Proteins· December 2023

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Protein target highlights in CASP15: Analysis of models by structure providers.
Leila T Alexander, Janani Durairaj, Andriy Kryshtafovych, Luciano A Abriata, Yusupha Bayo, Maya Topf

Proteins· December 2023

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Assessment of three-dimensional RNA structure prediction in CASP15.
Rhiju Das, Rachael C Kretsch, Adam J Simpkin, Thomas Mulvaney, Phillip Pham, Maya Topf

Proteins· December 2023

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Critical assessment of methods of protein structure prediction (CASP)-Round XV.
Andriy Kryshtafovych, Torsten Schwede, Maya Topf, Krzysztof Fidelis, John Moult

Proteins· December 2023

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CASP15 cryo-EM protein and RNA targets: Refinement and analysis using experimental maps.
Thomas Mulvaney, Rachael C Kretsch, Luc Elliott, Joseph G Beton, Andriy Kryshtafovych, Maya Topf

Proteins· December 2023

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PICKLUSTER: a protein-interface clustering and analysis plug-in for UCSF ChimeraX.
Luca R Genz, Thomas Mulvaney, Sanjana Nair, Maya Topf

Bioinformatics· November 2023

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Assessment of three-dimensional RNA structure prediction in CASP15.
Rhiju Das, Rachael C Kretsch, Adam J Simpkin, Thomas Mulvaney, Phillip Pham, Maya Topf

bioRxiv· October 2023

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RIBFIND2: Identifying rigid bodies in protein and nucleic acid structures.
Sony Malhotra, Thomas Mulvaney, Tristan Cragnolini, Haneesh Sidhu, Agnel P Joseph, Maya Topf

Nucleic Acids Res· October 2023

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CASP15 cryoEM protein and RNA targets: refinement and analysis using experimental maps.
Thomas Mulvaney, Rachael C Kretsch, Luc Elliott, Joe Beton, Andriy Kryshtafovych, Maya Topf

bioRxiv· August 2023

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Structural journey of an insecticidal protein against western corn rootworm.
Guendalina Marini, Brad Poland, Chris Leininger, Natalya Lukoyanova, Dan Spielbauer, Maya Topf

Nat Commun· July 2023

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Loss-of-Function Variants in in Infantile Parkinsonism-Dystonia.
Kimberley M Reid, Dora Steel, Sanjana Nair, Sanjay Bhate, Lorenzo Biassoni, Maya Topf

Cells· March 2023

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