Publications by authors named "Merce Llabres"

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Metadag: a web tool to generate and analyse metabolic networks.
Pere Palmer-Rodríguez, Ricardo Alberich, Mariana Reyes-Prieto, José A Castro, Mercè Llabrés

BMC Bioinformatics· January 2025

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Towards estimating the number of strains that make up a natural bacterial population.
Tomeu Viver, Roth E Conrad, Luis M Rodriguez-R, Ana S Ramírez, Stephanus N Venter

Nat Commun· January 2024

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Exploring the expressiveness of abstract metabolic networks.
Irene García, Bessem Chouaia, Mercè Llabrés, Marta Simeoni

PLoS One· February 2023

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Editorial: Influence of Protein-Protein Interactions (PPIs) on the Outcome of Viral Infections.
Rohit K Jangra, Mercè Llabrés, Pablo Guardado-Calvo, Eva Mittler, Gorka Lasso

Front Microbiol· June 2022

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The Generalized Robinson-Foulds Distance for Phylogenetic Trees.
Mercè Llabrés, Francesc Rosselló, Gabriel Valiente

J Comput Biol· December 2021

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MetNet: A two-level approach to reconstructing and comparing metabolic networks.
Nicoletta Cocco, Mercè Llabrés, Mariana Reyes-Prieto, Marta Simeoni

PLoS One· August 2021

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VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families.
Joan Carles Pons, David Paez-Espino, Gabriel Riera, Natalia Ivanova, Nikos C Kyrpides

Bioinformatics· July 2021

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Alignment of virus-host protein-protein interaction networks by integer linear programming: SARS-CoV-2.
Mercè Llabrés, Gabriel Valiente

PLoS One· January 2021

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The Metabolic Building Blocks of a Minimal Cell.
Mariana Reyes-Prieto, Rosario Gil, Mercè Llabrés, Pere Palmer-Rodríguez, Andrés Moya

Biology (Basel)· December 2020

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Alignment of biological networks by integer linear programming: virus-host protein-protein interaction networks.
Mercè Llabrés, Gabriel Riera, Francesc Rosselló, Gabriel Valiente

BMC Bioinformatics· November 2020

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AligNet: alignment of protein-protein interaction networks.
Adrià Alcalá, Ricardo Alberich, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente

BMC Bioinformatics· November 2020

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An update on the Symbiotic Genomes Database (SymGenDB): a collection of metadata, genomic, genetic and protein sequences, orthologs and metabolic networks of symbiotic organisms.
Mariana Reyes-Prieto, Carlos Vargas-Chávez, Mercè Llabrés, Pere Palmer, Amparo Latorre

Database (Oxford)· January 2020

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IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes.
David Paez-Espino, Simon Roux, I-Min A Chen, Krishna Palaniappan, Anna Ratner

Nucleic Acids Res· January 2019

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Correction: Metabolomics analysis: Finding out metabolic building blocks.
Ricardo Alberich, José A Castro, Mercè Llabrés, Pere Palmer-Rodríguez

PLoS One· October 2017

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Metabolomics analysis: Finding out metabolic building blocks.
Ricardo Alberich, José A Castro, Mercè Llabrés, Pere Palmer-Rodríguez

PLoS One· September 2017

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The comparison of tree-sibling time consistent phylogenetic networks is graph isomorphism-complete.
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente

ScientificWorldJournal· April 2015

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MP-Align: alignment of metabolic pathways.
Ricardo Alberich, Mercè Llabrés, David Sánchez, Marta Simeoni, Marc Tuduri

BMC Syst Biol· May 2014

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Comparison of galled trees.
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente

IEEE/ACM Trans Comput Biol Bioinform· June 2011

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Nodal distances for rooted phylogenetic trees.
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente

J Math Biol· August 2010

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On Nakhleh's metric for reduced phylogenetic networks.
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente

IEEE/ACM Trans Comput Biol Bioinform· February 2010

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Metrics for phylogenetic networks II: nodal and triplets metrics.
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente

IEEE/ACM Trans Comput Biol Bioinform· November 2009

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Metrics for phylogenetic networks I: generalizations of the Robinson-Foulds metric.
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente

IEEE/ACM Trans Comput Biol Bioinform· August 2009

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A distance metric for a class of tree-sibling phylogenetic networks.
Gabriel Cardona, Mercè Llabrés, Francesc Rosselló, Gabriel Valiente

Bioinformatics· July 2008

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On the ancestral compatibility of two phylogenetic trees with nested taxa.
Mercè Llabrés, Jairo Rocha, Francesc Rosselló, Gabriel Valiente

J Math Biol· September 2006

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