Publications by authors named "Michael Halter"

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Harmonizing the Generation and Pre-publication Stewardship of FAIR bioimage data.
Nikki Bialy, Frank Alber, Brenda Andrews, Michael Angelo, Brian Beliveau, Michael Halter

ArXiv· September 2025

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Establishing a reference focal plane using convolutional neural networks and beads for brightfield imaging.
Joe Chalfoun, Steven P Lund, Chenyi Ling, Adele Peskin, Laura Pierce, Michael Halter

Sci Rep· April 2024

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High-volume, label-free imaging for quantifying single-cell dynamics in induced pluripotent stem cell colonies.
Anthony J Asmar, Zackery A Benson, Adele P Peskin, Joe Chalfoun, Mylene Simon, Michael Halter

PLoS One· February 2024

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Contemporaneous sample data tracking for the generation of genome edited cell lines.
Anne L Plant, Michael W Halter, Jeffrey R Stinson, Gretchen R Greene

Sci Rep· December 2022

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Practical application of microsphere samples for benchmarking a quantitative phase imaging system.
Edward Kwee, Alexander Peterson, Michael Halter, John Elliott

Cytometry A· October 2021

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Establishing a reference focal plane using beads for trypan-blue-based viability measurements.
Adele Peskin, Steven P Lund, Laura Pierce, Firdavs Kurbanov, Leo Li-Ying Chan, Michael Halter

J Microsc· September 2021

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Information Thermodynamics and Reducibility of Large Gene Networks.
Swarnavo Sarkar, Joseph B Hubbard, Michael Halter, Anne L Plant

Entropy (Basel)· January 2021

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Probing pluripotency gene regulatory networks with quantitative live cell imaging.
Anne L Plant, Michael Halter, Jeffrey Stinson

Comput Struct Biotechnol J· September 2020

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The role of fluctuations in determining cellular network thermodynamics.
Joseph B Hubbard, Michael Halter, Swarnavo Sarkar, Anne L Plant

PLoS One· June 2020

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Mass Measurements of Focal Adhesions in Single Cells Using High Resolution Surface Plasmon Resonance Microscopy.
Alexander W Peterson, Michael Halter, Alessandro Tona, Anne L Plant, John T Elliott

Proc SPIE Int Soc Opt Eng· February 2018

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A novel measure and significance testing in data analysis of cell image segmentation.
Jin Chu Wu, Michael Halter, Raghu N Kacker, John T Elliott, Anne L Plant

BMC Bioinformatics· March 2017

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Lineage mapper: A versatile cell and particle tracker.
Joe Chalfoun, Michael Majurski, Alden Dima, Michael Halter, Kiran Bhadriraju

Sci Rep· November 2016

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Surface plasmon resonance microscopy: Achieving a quantitative optical response.
Alexander W Peterson, Michael Halter, Anne L Plant, John T Elliott

Rev Sci Instrum· September 2016

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Large-scale time-lapse microscopy of Oct4 expression in human embryonic stem cell colonies.
Kiran Bhadriraju, Michael Halter, Julien Amelot, Peter Bajcsy, Joe Chalfoun

Stem Cell Res· July 2016

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Survey statistics of automated segmentations applied to optical imaging of mammalian cells.
Peter Bajcsy, Antonio Cardone, Joe Chalfoun, Michael Halter, Derek Juba

BMC Bioinformatics· October 2015

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High resolution surface plasmon resonance imaging for single cells.
Alexander W Peterson, Michael Halter, Alessandro Tona, Anne L Plant

BMC Cell Biol· December 2014

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An automated protocol for performance benchmarking a widefield fluorescence microscope.
Michael Halter, Elianna Bier, Paul C DeRose, Gregory A Cooksey, Steven J Choquette

Cytometry A· November 2014

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Nonparametric estimates of drift and diffusion profiles via Fokker-Planck algebra.
Steven P Lund, Joseph B Hubbard, Michael Halter

J Phys Chem B· November 2014

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Testing Equality of Cell Populations Based on Shape and Geodesic Distance.
Charles Hagwood, Javier Bernal, Michael Halter, John Elliott, Tegan Brennan

IEEE Trans Med Imaging· December 2013

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Boltzmann's H-function and diffusion processes.
Joseph B Hubbard, Steven P Lund, Michael Halter

J Phys Chem B· October 2013

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Predicting rates of cell state change caused by stochastic fluctuations using a data-driven landscape model.
Daniel R Sisan, Michael Halter, Joseph B Hubbard, Anne L Plant

Proc Natl Acad Sci U S A· November 2012

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Modernizing the MTT assay with microfluidic technology and image cytometry.
Michael Halter

Cytometry A· August 2012

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Quantitative methods to characterize morphological properties of cell lines.
Annalaura Mancia, John T Elliott, Michael Halter, Kiran Bhadriraju, Alessandro Tona

Biotechnol Prog· July 2012

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Evaluation of segmentation algorithms on cell populations using CDF curves.
Charles Hagwood, Javier Bernal, Michael Halter, John Elliott

IEEE Trans Med Imaging· February 2012

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Cell cycle dependent TN-C promoter activity determined by live cell imaging.
Michael Halter, Daniel R Sisan, Joe Chalfoun, Benjamin L Stottrup, Antonio Cardone

Cytometry A· March 2011

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