Publications by authors named "Michael Linderman"

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NPSV-deep: a deep learning method for genotyping structural variants in short read genome sequencing data.
Michael D Linderman, Jacob Wallace, Alderik van der Heyde, Eliza Wieman, Daniel Brey

Bioinformatics· March 2024

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Development and Validation of a Comprehensive Genomics Knowledge Scale.
Michael D Linderman, Sabrina A Suckiel, Nathan Thompson, David J Weiss, J Scott Roberts

Public Health Genomics· February 2022

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NPSV: A simulation-driven approach to genotyping structural variants in whole-genome sequencing data.
Michael D Linderman, Crystal Paudyal, Musab Shakeel, William Kelley, Ali Bashir

Gigascience· July 2021

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MySeq: privacy-protecting browser-based personal Genome analysis for genomics education and exploration.
Michael D Linderman, Leo McElroy, Laura Chang

BMC Med Genomics· November 2019

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DECA: scalable XHMM exome copy-number variant calling with ADAM and Apache Spark.
Michael D Linderman, Davin Chia, Forrest Wallace, Frank A Nothaft

BMC Bioinformatics· October 2019

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Predispositional genome sequencing in healthy adults: design, participant characteristics, and early outcomes of the PeopleSeq Consortium.
Emilie S Zoltick, Michael D Linderman, Molly A McGinniss, Erica Ramos, Madeleine P Ball

Genome Med· February 2019

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Impacts of incorporating personal genome sequencing into graduate genomics education: a longitudinal study over three course years.
Michael D Linderman, Saskia C Sanderson, Ali Bashir, George A Diaz, Andrew Kasarskis

BMC Med Genomics· January 2018

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Genetic identification of a common collagen disease in puerto ricans via identity-by-descent mapping in a health system.
Gillian Morven Belbin, Jacqueline Odgis, Elena P Sorokin, Muh-Ching Yee, Sumita Kohli, Michael Linderman

Elife· September 2017

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Concordance between Research Sequencing and Clinical Pharmacogenetic Genotyping in the eMERGE-PGx Study.
Laura J Rasmussen-Torvik, Berta Almoguera, Kimberly F Doheny, Robert R Freimuth, Adam S Gordon, Michael D Linderman

J Mol Diagn· July 2017

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Factors associated with success of telaprevir- and boceprevir-based triple therapy for hepatitis C virus infection.
Kian Bichoupan, Neeta Tandon, Valerie Martel-Laferriere, Neal M Patel, David Sachs, Michael Linderman

World J Hepatol· April 2017

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Psychological and behavioural impact of returning personal results from whole-genome sequencing: the HealthSeq project.
Saskia C Sanderson, Michael D Linderman, Sabrina A Suckiel, Randi Zinberg, Melissa Wasserstein

Eur J Hum Genet· February 2017

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Toward clinical genomics in everyday medicine: perspectives and recommendations.
Susan K Delaney, Michael L Hultner, Howard J Jacob, David H Ledbetter, Jeanette J McCarthy, Michael Linderman

Expert Rev Mol Diagn· December 2016

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Impact of Genomic Counseling on Informed Decision-Making among ostensibly Healthy Individuals Seeking Personal Genome Sequencing: the HealthSeq Project.
Sabrina A Suckiel, Michael D Linderman, Saskia C Sanderson, George A Diaz, Melissa Wasserstein

J Genet Couns· October 2016

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Visualization and cellular hierarchy inference of single-cell data using SPADE.
Benedict Anchang, Tom D P Hart, Sean C Bendall, Peng Qiu, Zach Bjornson, Michael Linderman

Nat Protoc· July 2016

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Development and clinical application of an integrative genomic approach to personalized cancer therapy.
Andrew V Uzilov, Wei Ding, Marc Y Fink, Yevgeniy Antipin, Andrew S Brohl, Michael Linderman

Genome Med· June 2016

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Personal Genome Sequencing in Ostensibly Healthy Individuals and the PeopleSeq Consortium.
Michael D Linderman, Daiva E Nielsen, Robert C Green

J Pers Med· March 2016

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Motivations, concerns and preferences of personal genome sequencing research participants: Baseline findings from the HealthSeq project.
Saskia C Sanderson, Michael D Linderman, Sabrina A Suckiel, George A Diaz, Randi E Zinberg

Eur J Hum Genet· January 2016

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Motivations, concerns and preferences of personal genome sequencing research participants: Baseline findings from the HealthSeq project.
Saskia C Sanderson, Michael D Linderman, Sabrina A Suckiel, George A Diaz, Randi E Zinberg

Eur J Hum Genet· January 2016

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Genetic fine mapping and genomic annotation defines causal mechanisms at type 2 diabetes susceptibility loci.
Kyle J Gaulton, Teresa Ferreira, Yeji Lee, Anne Raimondo, Reedik Mägi, Michael Linderman

Nat Genet· December 2015

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How do students react to analyzing their own genomes in a whole-genome sequencing course?: outcomes of a longitudinal cohort study.
Saskia C Sanderson, Michael D Linderman, Randi Zinberg, Ali Bashir, Andrew Kasarskis

Genet Med· November 2015

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A dynamical model improves reconstruction of handwriting from multichannel electromyographic recordings.
Elizaveta Okorokova, Mikhail Lebedev, Michael Linderman, Alex Ossadtchi

Front Neurosci· November 2015

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Preparing the next generation of genomicists: a laboratory-style course in medical genomics.
Michael D Linderman, Ali Bashir, George A Diaz, Andrew Kasarskis, Saskia C Sanderson

BMC Med Genomics· August 2015

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Novel, compound heterozygous, single-nucleotide variants in MARS2 associated with developmental delay, poor growth, and sensorineural hearing loss.
Bryn D Webb, Patricia G Wheeler, Jacob J Hagen, Ninette Cohen, Michael D Linderman

Hum Mutat· June 2015

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Costs of telaprevir-based triple therapy for hepatitis C: $189,000 per sustained virological response.
Kian Bichoupan, Valerie Martel-Laferriere, David Sachs, Michel Ng, Emily A Schonfeld, Michael Linderman

Hepatology· October 2014

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Integrated genome-wide association, coexpression network, and expression single nucleotide polymorphism analysis identifies novel pathway in allergic rhinitis.
Supinda Bunyavanich, Eric E Schadt, Blanca E Himes, Jessica Lasky-Su, Weiliang Qiu, Michael Linderman

BMC Med Genomics· August 2014

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