Publications by authors named "Michael Nilges"

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InDeepNet: a web platform for predicting functional binding sites in proteins using InDeep.
Fabien Mareuil, Rachel Torchet, Luis Checa Ruano, Vincent Mallet, Michael Nilges

Nucleic Acids Res· July 2025

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Dynamic interplay between a TonB-dependent heme transporter and a TonB protein in a membrane environment.
Kamolrat Somboon, Oliver Melling, Maylis Lejeune, Glaucia M S Pinheiro, Annick Paquelin, Michael Nilges

mBio· December 2024

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Protein interaction explorer (PIE): a comprehensive platform for navigating protein-protein interactions and ligand binding pockets.
Fabien Mareuil, Alexandra Moine-Franel, Anuradha Kar, Michael Nilges, Constantin Bogdan Ciambur

Bioinformatics· July 2024

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Structure and Dynamics of Type 4a Pili and Type 2 Secretion System Endopili.
Nadia Izadi-Pruneyre, Yasaman Karami, Michael Nilges

Subcell Biochem· July 2024

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A comprehensive dataset of protein-protein interactions and ligand binding pockets for advancing drug discovery.
Alexandra Moine-Franel, Fabien Mareuil, Michael Nilges, Constantin Bogdan Ciambur, Olivier Sperandio

Sci Data· April 2024

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The hinge-engineered IgG1-IgG3 hybrid subclass IgGh potently enhances Fc-mediated function of anti-streptococcal and SARS-CoV-2 antibodies.
Arman Izadi, Yasaman Karami, Eleni Bratanis, Sebastian Wrighton, Hamed Khakzad, Michael Nilges

Nat Commun· April 2024

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AlignScape, displaying sequence similarity using self-organizing maps.
Isaac Filella-Merce, Vincent Mallet, Eric Durand, Michael Nilges, Guillaume Bouvier

Front Bioinform· January 2024

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Acinetobacter type VI secretion system comprises a non-canonical membrane complex.
Ona Kandolo, Yassine Cherrak, Isaac Filella-Merce, Hugo Le Guenno, Artemis Kosta, Michael Nilges

PLoS Pathog· September 2023

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Structure and dynamic association of an assembly platform subcomplex of the bacterial type II secretion system.
Régine Dazzoni, Yuanyuan Li, Aracelys López-Castilla, Sébastien Brier, Ariel Mechaly, Michael Nilges

Structure· February 2023

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Secondary structure and H,  N & C resonance assignments of the periplasmic domain of OutG, major pseudopilin from Dickeya dadantii type II secretion system.
Theis Jacobsen, Régine Dazzoni, Melvin G Renault, Benjamin Bardiaux, Michael Nilges

Biomol NMR Assign· October 2022

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Building Protein Atomic Models from Cryo-EM Density Maps and Residue Co-Evolution.
Guillaume Bouvier, Benjamin Bardiaux, Riccardo Pellarin, Chiara Rapisarda, Michael Nilges

Biomolecules· September 2022

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Enzymatic and Molecular Characterization of Anti- Molecules That Differently Target and Mammalian eIF4A Proteins, LieIF4A and eIF4A.
Yosser Zina Abdelkrim, Emna Harigua-Souiai, Imen Bassoumi-Jamoussi, Mourad Barhoumi, Josette Banroques, Michael Nilges

Molecules· September 2022

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Author Correction: Bat coronaviruses related to SARS-CoV-2 and infectious for human cells.
Sarah Temmam, Khamsing Vongphayloth, Eduard Baquero, Sandie Munier, Massimiliano Bonomi, Michael Nilges

Nature· July 2022

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Bat coronaviruses related to SARS-CoV-2 and infectious for human cells.
Sarah Temmam, Khamsing Vongphayloth, Eduard Baquero, Sandie Munier, Massimiliano Bonomi, Michael Nilges

Nature· April 2022

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InDeep: 3D fully convolutional neural networks to assist in silico drug design on protein-protein interactions.
Vincent Mallet, Luis Checa Ruano, Alexandra Moine Franel, Michael Nilges, Karen Druart

Bioinformatics· February 2022

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Computational and biochemical analysis of type IV pilus dynamics and stability.
Yasaman Karami, Aracelys López-Castilla, Andrea Ori, Jenny-Lee Thomassin, Benjamin Bardiaux, Michael Nilges

Structure· December 2021

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H,  N and C resonance assignments of the C-terminal domain of PulL, a component of the Klebsiella oxytoca type II secretion system.
Régine Dazzoni, Aracelys López-Castilla, Florence Cordier, Benjamin Bardiaux, Michael Nilges

Biomol NMR Assign· October 2021

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quicksom: Self-Organizing Maps on GPUs for clustering of molecular dynamics trajectories.
Vincent Mallet, Michael Nilges, Guillaume Bouvier

Bioinformatics· August 2021

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Host-Pathogen Adhesion as the Basis of Innovative Diagnostics for Emerging Pathogens.
Alex van Belkum, Carina Almeida, Benjamin Bardiaux, Sarah V Barrass, Sarah J Butcher, Michael Nilges

Diagnostics (Basel)· July 2021

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Automatic Bayesian Weighting for SAXS Data.
Yannick G Spill, Yasaman Karami, Pierre Maisonneuve, Nicolas Wolff, Michael Nilges

Front Mol Biosci· June 2021

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The iPPI-DB initiative: a community-centered database of protein-protein interaction modulators.
Rachel Torchet, Karen Druart, Luis Checa Ruano, Alexandra Moine-Franel, Hélène Borges, Michael Nilges

Bioinformatics· April 2021

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Structural determination of Streptococcus pyogenes M1 protein interactions with human immunoglobulin G using integrative structural biology.
Hamed Khakzad, Lotta Happonen, Yasaman Karami, Sounak Chowdhury, Gizem Ertürk Bergdahl, Michael Nilges

PLoS Comput Biol· January 2021

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ARIAweb: a server for automated NMR structure calculation.
Fabrice Allain, Fabien Mareuil, Hervé Ménager, Michael Nilges, Benjamin Bardiaux

Nucleic Acids Res· July 2020

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Structure and function of minor pilins of type IV pili.
Theis Jacobsen, Benjamin Bardiaux, Olivera Francetic, Nadia Izadi-Pruneyre, Michael Nilges

Med Microbiol Immunol· June 2020

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Bayesian inference of chromatin structure ensembles from population-averaged contact data.
Simeon Carstens, Michael Nilges, Michael Habeck

Proc Natl Acad Sci U S A· April 2020

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